| The RAST Server: rapid annotations using subsystems technology RK Aziz, D Bartels, AA Best, M DeJongh, T Disz, RA Edwards, K Formsma, ... BMC genomics 9, 1-15, 2008 | 12488 | 2008 |
| The metagenomics RAST server–a public resource for the automatic phylogenetic and functional analysis of metagenomes F Meyer, D Paarmann, M D'Souza, R Olson, EM Glass, M Kubal, ... BMC bioinformatics 9, 1-8, 2008 | 4105 | 2008 |
| The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ... Gigascience 1 (1), 2047-217X-1-7, 2012 | 832 | 2012 |
| Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ... Nature biotechnology 29 (5), 415-420, 2011 | 760 | 2011 |
| Using the metagenomics RAST server (MG-RAST) for analyzing shotgun metagenomes EM Glass, J Wilkening, A Wilke, D Antonopoulos, F Meyer Cold Spring Harbor Protocols 2010 (1), pdb. prot5368, 2010 | 374 | 2010 |
| The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools A Wilke, T Harrison, J Wilkening, D Field, EM Glass, N Kyrpides, ... BMC bioinformatics 13, 1-5, 2012 | 346 | 2012 |
| The MG-RAST metagenomics database and portal in 2015 A Wilke, J Bischof, W Gerlach, E Glass, T Harrison, KP Keegan, T Paczian, ... Nucleic acids research 44 (D1), D590-D594, 2016 | 245 | 2016 |
| Red death in Caenorhabditis elegans caused by Pseudomonas aeruginosa PAO1 A Zaborin, K Romanowski, S Gerdes, C Holbrook, F Lepine, J Long, ... Proceedings of the National Academy of Sciences 106 (15), 6327-6332, 2009 | 241 | 2009 |
| Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG S Mitra, P Rupek, DC Richter, T Urich, JA Gilbert, F Meyer, A Wilke, ... BMC bioinformatics 12, 1-8, 2011 | 192 | 2011 |
| MG-RAST version 4—lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis F Meyer, S Bagchi, S Chaterji, W Gerlach, A Grama, T Harrison, T Paczian, ... Briefings in bioinformatics 20 (4), 1151-1159, 2019 | 149 | 2019 |
| The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome. Gigascience 1: 7 D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ... | 146 | 2012 |
| Skyport-container-based execution environment management for multi-cloud scientific workflows W Gerlach, W Tang, K Keegan, T Harrison, A Wilke, J Bischof, M D'Souza, ... 2014 5th International Workshop on Data-Intensive Computing in the Clouds, 25-32, 2014 | 137 | 2014 |
| Comprehensive analysis of the extracellular proteins from Xanthomonas campestris pv. campestris B100 SA Watt, A Wilke, T Patschkowski, K Niehaus Proteomics 5 (1), 153-167, 2005 | 121 | 2005 |
| A platform-independent method for detecting errors in metagenomic sequencing data: DRISEE KP Keegan, WL Trimble, J Wilkening, A Wilke, T Harrison, M D'Souza, ... PLoS computational biology 8 (6), e1002541, 2012 | 100 | 2012 |
| A RESTful API for accessing microbial community data for MG-RAST A Wilke, J Bischof, T Harrison, T Brettin, M D'Souza, W Gerlach, ... PLoS computational biology 11 (1), e1004008, 2015 | 91 | 2015 |
| Using clouds for metagenomics: a case study J Wilkening, A Wilke, N Desai, F Meyer 2009 IEEE International Conference on Cluster Computing and Workshops, 1-6, 2009 | 91 | 2009 |
| The complete genome sequence for putative H2‐ and S‐oxidizer Candidatus Sulfuricurvum sp., assembled de novo from an aquifer‐derived metagenome KM Handley, D Bartels, EJ O'Loughlin, KH Williams, WL Trimble, ... Environmental microbiology 16 (11), 3443-3462, 2014 | 77 | 2014 |
| Short-read reading-frame predictors are not created equal: sequence error causes loss of signal WL Trimble, KP Keegan, M D’Souza, A Wilke, J Wilkening, J Gilbert, ... BMC bioinformatics 13, 1-10, 2012 | 59 | 2012 |
| MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment EM Glass, Y Dribinsky, P Yilmaz, H Levin, R Van Pelt, D Wendel, A Wilke, ... The ISME journal 8 (1), 1-3, 2014 | 50 | 2014 |
| Synergistic use of plant-prokaryote comparative genomics for functional annotations S Gerdes, B El Yacoubi, M Bailly, IK Blaby, CE Blaby-Haas, L Jeanguenin, ... BMC genomics 12, 1-16, 2011 | 47 | 2011 |
Folker MeyerUniversity of Duisburg-Essen; University Hospital EssenPatvirtintas el. paštas uni-due.de