Kathryn Holt

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205 straipsniai

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Ryan WickUniversity of MelbournePatvirtintas el. paštas unimelb.edu.au
Kelly L. WyresMonash UniversityPatvirtintas el. paštas monash.edu
Stephen BakerUniversity of CambridgePatvirtintas el. paštas medschl.cam.ac.uk
Michael InouyeProfessor of Systems Genomics & Population Health, University of Cambridge; Baker InstitutePatvirtintas el. paštas medschl.cam.ac.uk
François-Xavier WeillProfessor, Institut Pasteur, Paris, FrancePatvirtintas el. paštas pasteur.fr
John WainQuadram Institute BiosciencesPatvirtintas el. paštas jidc.org
Justin ZobelComputing and Information Systems, University of MelbournePatvirtintas el. paštas unimelb.edu.au
Robert A KingsleyGroup Leader at the Quadram Institute Bioscience, UKPatvirtintas el. paštas quadram.ac.uk
Abhilasha KarkeyOxford University Clinical Research UnitPatvirtintas el. paštas oucru.org
Mark Achtman FRSemeritus Professor University of Warwick, previously University College Cork and Max-PlanckPatvirtintas el. paštas warwick.ac.uk
Sarah DunstanPeter Doherty Institute for Infection and Immunity, The University of MelbournePatvirtintas el. paštas unimelb.edu.au
Stephen BentleyWellcome Sanger InstitutePatvirtintas el. paštas sanger.ac.uk
Simon R. HarrisSenior Program Officer, Bill & Melinda Gates FoundationPatvirtintas el. paštas sanger.ac.uk
Tim StinearProfessor, University of MelbournePatvirtintas el. paštas unimelb.edu.au
Edward C HolmesUniversity of SydneyPatvirtintas el. paštas sydney.edu.au
Minh-Duy PhanThe University of QueenslandPatvirtintas el. paštas uq.edu.au
Ian GoodheadUniversity of SalfordPatvirtintas el. paštas salford.ac.uk
Sebastien GagneuxSwiss Tropical and Public Health InstitutePatvirtintas el. paštas swisstph.ch
Trevor D LawleyWellcome Trust Sanger InstitutePatvirtintas el. paštas sanger.ac.uk
William HanageHarvard T H Chan School of Public HealthPatvirtintas el. paštas hsph.harvard.edu

Stebėti

Kathryn Holt

LSHTM & Monash University

Patvirtintas el. paštas lshtm.ac.uk - Pagrindinis puslapis

microbial genomics & infection


Pavadinimas Rūšiuoti pagal šaltinius Rūšiuoti pagal metus Rūšiuoti pagal pavadinimą	Cituota Cituota	Metai
Unicycler: resolving bacterial genome assemblies from short and long sequencing reads RR Wick, LM Judd, CL Gorrie, KE Holt PLOS Computational Biology 13 (6), e1005595, 2017	6646	2017
Bandage: interactive visualization of de novo genome assemblies RR Wick, MB Schultz, J Zobel, KE Holt Bioinformatics 31 (20), 3350-2, 2015	2234	2015
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans I Comas, M Coscolla, T Luo, S Borrell, KE Holt, M Kato-Maeda, J Parkhill, ... Nature genetics 45 (10), 1176-1182, 2013	1331	2013
Performance of neural network basecalling tools for Oxford Nanopore sequencing RR Wick, LM Judd, KE Holt Genome Biology 20 (1), 129, 2019	1316	2019
Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health KE Holt, H Wertheim, RN Zadoks, S Baker, CA Whitehouse, D Dance, ... Proceedings of the National Academy of Sciences 112 (27), E3574-E3581, 2015	1301	2015
SRST2: Rapid genomic surveillance for public health and hospital microbiology labs M Inouye, H Dashnow, LA Raven, MB Schultz, BJ Pope, T Tomita, J Zobel, ... Genome Medicine 6 (11), 1-16, 2014	1046	2014
The Infant Nasopharyngeal Microbiome Impacts Severity of Lower Respiratory Infection and Risk of Asthma Development SM Teo, D Mok, K Pham, M Kusel, M Serralha, N Troy, BJ Holt, BJ Hales, ... Cell Host and Microbe 17 (5), 704-715, 2015	1004	2015
Completing bacterial genome assemblies with multiplex MinION sequencing RR Wick, LM Judd, CL Gorrie, KE Holt Microbial Genomics, 2017	856	2017
Population genomics of Klebsiella pneumoniae KL Wyres, MMC Lam, KE Holt Nature Reviews Microbiology 18 (6), 344-359, 2020	844	2020
Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype RA Kingsley, CL Msefula, NR Thomson, S Kariuki, KE Holt, MA Gordon, ... Genome research 19 (12), 2279-2287, 2009	642	2009
A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex MMC Lam, RR Wick, SC Watts, LT Cerdeira, KL Wyres, KE Holt Nature communications 12 (1), 4188, 2021	639	2021
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi KE Holt, J Parkhill, CJ Mazzoni, P Roumagnac, FX Weill, I Goodhead, ... Nature genetics 40 (8), 987-993, 2008	593	2008
Klebsiella pneumoniae as a key trafficker of drug resistance genes from environmental to clinically important bacteria KL Wyres, KE Holt Current opinion in microbiology 45, 131-139, 2018	589	2018
Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4 New England Journal of Medicine 365 (8), 718-724, 2011	547	2011
Gastrointestinal carriage is a major reservoir of Klebsiella pneumoniae infection in intensive care patients CL Gorrie, M Mirčeta, RR Wick, DJ Edwards, NR Thomson, RA Strugnell, ... Clinical Infectious Diseases 65 (2), 208-215, 2017	540	2017
Identification of Klebsiella capsule synthesis loci from whole genome data K Wyres, RR Wick, C Gorrie, A Jenney, R Follador, NR Thomson, KE Holt bioRxiv, 071415, 2016	505	2016
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter-and intracontinental transmission events VK Wong, S Baker, DJ Pickard, J Parkhill, AJ Page, NA Feasey, ... Nature Genetics 47 (6), 632-639, 2015	502	2015
Evolutionary dynamics of Clostridium difficile over short and long time scales M He, M Sebaihia, TD Lawley, RA Stabler, LF Dawson, MJ Martin, KE Holt, ... Proceedings of the National Academy of Sciences 107 (16), 7527, 2010	438	2010
Polypolish: short-read polishing of long-read bacterial genome assemblies RR Wick, KE Holt PLOS Computational Biology 18 (1), e1009802, 2022	394	2022
Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens S Baker, N Thomson, FX Weill, KE Holt Science 360 (6390), 733-738, 2018	359	2018

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