Francesco Vallania

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Purvesh KhatriStanford UniversityPatvirtintas el. paštas stanford.edu
Winston A. HaynesSenior Data Scientist @ BigHat Biosciences, previously @ Serimmune and StanfordPatvirtintas el. paštas bighatbio.com
Todd E. Druley, MD, PhDMission Bio, IncPatvirtintas el. paštas missionbio.com
Mark M. DavisStanford UniversityPatvirtintas el. paštas stanford.edu
Erika BongenBristol-Myers SquibbPatvirtintas el. paštas bms.com
Hayley WarsinskeHead of Computational Immunology, Priovant TherapeuticsPatvirtintas el. paštas umich.edu
Timothy E SweeneyInflammatix Inc; previously @ StanfordPatvirtintas el. paštas alumni.stanford.edu
Michele DonatoSenior Bioinformatics Research Engineer, FreenomePatvirtintas el. paštas freenome.com
Carlos CruchagaProfessor. NeuroGenomics and Informatics Center DirectorPatvirtintas el. paštas wustl.edu
Valeria PoliProfessor of Molecular BiologyPatvirtintas el. paštas unito.it
Justin C. FayUniversity of RochesterPatvirtintas el. paštas rochester.edu
Andrew Bredemeyer, PhDPierianDxPatvirtintas el. paštas pieriandx.com
Manoj TyagiNational Cancer Institute, NIHPatvirtintas el. paštas nih.gov
David H. SpencerAssistant Professor, Division of Oncology, Department of Medicine, Washington UniversityPatvirtintas el. paštas wustl.edu
Scot J MatkovichPrincipal Research Scientist, Eli Lilly and CompanyPatvirtintas el. paštas lilly.com
Paolo ProveroProfessor, University of TurinPatvirtintas el. paštas unito.it
Zane GoodwinWashington University in St. LouisPatvirtintas el. paštas wustl.edu
Marc ShermanMassachusetts General HospitalPatvirtintas el. paštas partners.org
Don ConradProfessor, Oregon Health & Science UniversityPatvirtintas el. paštas ohsu.edu
Edward RamosResearch Associate, Emory UniversityPatvirtintas el. paštas emory.edu

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Francesco Vallania

Group Leader - Translational Science @ Freenome, formerly @ ITI, Stanford University

Patvirtintas el. paštas stanford.edu

Systems Immunology Genomics Gene Regulation


Pavadinimas Rūšiuoti pagal šaltinius Rūšiuoti pagal metus Rūšiuoti pagal pavadinimą	Cituota Cituota	Metai
Rare Variants in APP, PSEN1 and PSEN2 Increase Risk for AD in Late-Onset Alzheimer's Disease Families C Cruchaga, S Chakraverty, K Mayo, FLM Vallania, RD Mitra, K Faber, ... PloS one 7 (2), e31039, 2012	397	2012
Single-cell chromatin modification profiling reveals increased epigenetic variations with aging P Cheung, F Vallania, HC Warsinske, M Donato, S Schaffert, SE Chang, ... Cell, 2018	336	2018
A multi-cohort study of the immune factors associated with M. tuberculosis infection outcomes R Roy Chowdhury, F Vallania, Q Yang, CJ Lopez Angel, F Darboe, ... Nature 560 (7720), 644-648, 2018	268	2018
Increased monocyte count as a cellular biomarker for poor outcomes in fibrotic diseases: a retrospective, multicentre cohort study MKD Scott, K Quinn, Q Li, R Carroll, H Warsinske, F Vallania, S Chen, ... The Lancet Respiratory Medicine 7 (6), 497-508, 2019	230	2019
Quantification of rare allelic variants from pooled genomic DNA TE Druley, FLM Vallania, DJ Wegner, KE Varley, OL Knowles, JA Bonds, ... Nature methods 6 (4), 263-265, 2009	219	2009
Cell-centred meta-analysis reveals baseline predictors of anti-TNFα non-response in biopsy and blood of patients with IBD R Gaujoux, E Starosvetsky, N Maimon, F Vallania, H Bar-Yoseph, ... Gut 68 (4), 604-614, 2019	192	2019
Interpretation of biological experiments changes with evolution of the Gene Ontology and its annotations A Tomczak, JM Mortensen, R Winnenburg, C Liu, DT Alessi, V Swamy, ... Scientific reports 8 (1), 5115, 2018	186	2018
Leveraging heterogeneity across multiple datasets increases cell-mixture deconvolution accuracy and reduces biological and technical biases F Vallania, A Tam, S Lofgren, S Schaffert, TD Azad, E Bongen, W Haynes, ... Nature communications 9 (1), 4735, 2018	163	2018
Performance of common analysis methods for detecting low-frequency single nucleotide variants in targeted next-generation sequence data DH Spencer, M Tyagi, F Vallania, AJ Bredemeyer, JD Pfeifer, RD Mitra, ... The Journal of Molecular Diagnostics 16 (1), 75-88, 2014	162	2014
Methods to increase reproducibility in differential gene expression via meta-analysis TE Sweeney, WA Haynes, F Vallania, JP Ioannidis, P Khatri Nucleic acids research 45 (1), e1-e1, 2017	155	2017
Multicohort analysis reveals baseline transcriptional predictors of influenza vaccination responses H team Science Immunology, 2017	148	2017
Empowering multi-cohort gene expression analysis to increase reproducibility WA Haynes, F Vallania, C Liu, E Bongen, A Tomczak, M Andres-Terrè, ... Pacific symposium on biocomputing 2017, 144-153, 2017	143	2017
TATA is a modular component of synthetic promoters I Mogno, F Vallania, RD Mitra, BA Cohen Genome research 20 (10), 1391-1397, 2010	124	2010
Cellular senescence impairs the reversibility of pulmonary arterial hypertension DE Van Der Feen, GPL Bossers, QAJ Hagdorn, JR Moonen, K Kurakula, ... Science Translational Medicine 12 (554), eaaw4974, 2020	115	2020
Cardiac signaling genes exhibit unexpected sequence diversity in sporadic cardiomyopathy, revealing HSPB7 polymorphisms associated with disease SJ Matkovich, DJ Van Booven, A Hindes, MY Kang, TE Druley, ... The Journal of clinical investigation 120 (1), 280-289, 2010	94	2010
Genome-wide discovery of functional transcription factor binding sites by comparative genomics: the case of Stat3 F Vallania, D Schiavone, S Dewilde, E Pupo, S Garbay, R Calogero, ... Proceedings of the National Academy of Sciences 106 (13), 5117-5122, 2009	91	2009
High-throughput discovery of rare insertions and deletions in large cohorts FLM Vallania, TE Druley, E Ramos, J Wang, I Borecki, M Province, ... Genome research 20 (12), 1711-1718, 2010	81	2010
A 20-gene set predictive of progression to severe dengue M Robinson, TE Sweeney, R Barouch-Bentov, MK Sahoo, L Kalesinskas, ... Cell reports 26 (5), 1104-1111. e4, 2019	80	2019
Rare missense variants in CHRNB4 are associated with reduced risk of nicotine dependence G Haller, T Druley, FL Vallania, RD Mitra, P Li, G Akk, JH Steinbach, ... Human molecular genetics 21 (3), 647-655, 2012	77	2012
The RhoU/Wrch1 Rho GTPase gene is a common transcriptional target of both the gp130/STAT3 and Wnt-1 pathways D Schiavone, S Dewilde, F Vallania, J Turkson, F Di Cunto, V Poli Biochemical Journal 421 (2), 283-292, 2009	75	2009

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