Stefano Forli

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Arthur OlsonProfesssor The Scripps Research InstitutePatvirtintas el. paštas scripps.edu
Diogo Santos-MartinsThe Scripps Research InstitutePatvirtintas el. paštas scripps.edu
David S. GoodsellThe Scripps Research InstitutePatvirtintas el. paštas scripps.edu
Jerome EberhardtResearch Associate, The Scripps Research InstitutePatvirtintas el. paštas scripps.edu
Andreas Frank TillackScripps ResearchPatvirtintas el. paštas scripps.edu
Michel SannerProfessor of Computational Biology at Scripps Research La Jolla CAPatvirtintas el. paštas scripps.edu
Benjamin CravattProfessor of Chemistry, The Scripps Research InstitutePatvirtintas el. paštas scripps.edu
Fabrizio ManettiProfessor, University of Siena (Italy)Patvirtintas el. paštas unisi.it
Dennis WolanSenior Principal Scientist, GenentechPatvirtintas el. paštas gene.com
Giulia BiancoPostdoctoral research associate, Scripps ResearchPatvirtintas el. paštas scripps.edu
Andreas KochProfessor, Embedded Systems and Applications Group (ESA), TU DarmstadtPatvirtintas el. paštas esa.tu-darmstadt.de
Matthew HolcombScripps ResearchPatvirtintas el. paštas scripps.edu
Keriann BackusUCLAPatvirtintas el. paštas mednet.ucla.edu
Leonardo Solis-VasquezPostdoctoral research associate, Technical University of DarmstadtPatvirtintas el. paštas esa.tu-darmstadt.de
Bruno CorreiaEcole Polytechnique Federale de LausannePatvirtintas el. paštas epfl.ch
Ronald M. LevyProfessor of ChemistryPatvirtintas el. paštas temple.edu
Nanjie DengPace UniversityPatvirtintas el. paštas pace.edu
Garrett M. MorrisUniversity of OxfordPatvirtintas el. paštas stats.ox.ac.uk
Seiya KitamuraThe Scripps Research InstitutePatvirtintas el. paštas scripps.edu
GONZALO E. GONZALEZ-PAEZThe Scripps Research InstitutePatvirtintas el. paštas scripps.edu

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Stefano Forli

Scripps Research, Dep. Integrative Structural Computational Biology @ForliLab

Patvirtintas el. paštas scripps.edu - Pagrindinis puslapis

computational chemistry stucture-based drug design molecular docking drug discovery


Pavadinimas Rūšiuoti pagal šaltinius Rūšiuoti pagal metus Rūšiuoti pagal pavadinimą	Cituota Cituota	Metai
AutoDock Vina 1.2.0: New Docking Methods, Expanded Force Field, and Python Bindings J Eberhardt, D Santos-Martins, AF Tillack, S Forli Journal of Chemical Information and Modeling 61 (8), 3891–3898, 2021	3582	2021
Computational protein–ligand docking and virtual drug screening with the AutoDock suite S Forli, R Huey, ME Pique, MF Sanner, DS Goodsell, AJ Olson Nature protocols 11 (5), 905-919, 2016	2262	2016
Proteome-wide covalent ligand discovery in native biological systems KM Backus, BE Correia, KM Lum, S Forli, BD Horning, GE González-Páez, ... Nature 534 (7608), 570-574, 2016	828	2016
Virtual screening with AutoDock: theory and practice S Cosconati, S Forli, AL Perryman, R Harris, DS Goodsell, AJ Olson Expert opinion on drug discovery 5 (6), 597-607, 2010	755	2010
AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility PA Ravindranath, S Forli, DS Goodsell, AJ Olson, MF Sanner PLoS computational biology 11 (12), e1004586, 2015	514	2015
Using AutoDock 4 and AutoDock vina with AutoDockTools: a tutorial R Huey, GM Morris, S Forli The Scripps Research Institute Molecular Graphics Laboratory 10550 (92037), 1000, 2012	459	2012
Global profiling of lysine reactivity and ligandability in the human proteome SM Hacker, KM Backus, MR Lazear, S Forli, BE Correia, BF Cravatt Nature chemistry 9 (12), 1181-1190, 2017	430	2017
A force field with discrete displaceable waters and desolvation entropy for hydrated ligand docking S Forli, AJ Olson Journal of medicinal chemistry 55 (2), 623-638, 2012	343	2012
AutoDock4_Zn: An Improved AutoDock Force Field for Small-Molecule Docking to Zinc Metalloproteins D Santos-Martins, S Forli, MJ Ramos, AJ Olson Journal of chemical information and modeling 54 (8), 2371-2379, 2014	277	2014
Accelerating AutoDock4 with GPUs and Gradient-Based Local Search D Santos-Martins, L Solis-Vasquez, AF Tillack, MF Sanner, A Koch, S Forli Journal of chemical theory and computation 17 (2), 1060-1073, 2021	271	2021
An activity-guided map of electrophile-cysteine interactions in primary human T cells EV Vinogradova, X Zhang, D Remillard, DC Lazar, RM Suciu, Y Wang, ... Cell 182 (4), 1009-1026. e29, 2020	270	2020
“Inverse drug discovery” strategy to identify proteins that are targeted by latent electrophiles as exemplified by aryl fluorosulfates DE Mortenson, GJ Brighty, L Plate, G Bare, W Chen, S Li, H Wang, ... Journal of the American Chemical Society 140 (1), 200-210, 2018	268	2018
Structure, lipid scrambling activity and role in autophagosome formation of ATG9A S Maeda, H Yamamoto, LN Kinch, CM Garza, S Takahashi, C Otomo, ... Nature structural & molecular biology 27 (12), 1194-1201, 2020	262	2020
Covalent docking using autodock: Two‐point attractor and flexible side chain methods G Bianco, S Forli, DS Goodsell, AJ Olson Protein Science 25 (1), 295-301, 2016	223	2016
Supercomputer-based ensemble docking drug discovery pipeline with application to COVID-19 A Acharya, R Agarwal, MB Baker, J Baudry, D Bhowmik, S Boehm, ... Journal of chemical information and modeling 60 (12), 5832-5852, 2020	182	2020
SuFEx-enabled, agnostic discovery of covalent inhibitors of human neutrophil elastase Q Zheng, JL Woehl, S Kitamura, D Santos-Martins, CJ Smedley, G Li, ... Proceedings of the National Academy of Sciences 116 (38), 18808-18814, 2019	172	2019
The AutoDock suite at 30 DS Goodsell, MF Sanner, AJ Olson, S Forli Protein Science 30 (1), 31-43, 2021	159	2021
Expedited mapping of the ligandable proteome using fully functionalized enantiomeric probe pairs Y Wang, MM Dix, G Bianco, JR Remsberg, HY Lee, M Kalocsay, SP Gygi, ... Nature chemistry 11 (12), 1113-1123, 2019	138	2019
Structural basis for strand-transfer inhibitor binding to HIV intasomes DO Passos, M Li, IK Jóźwik, XZ Zhao, D Santos-Martins, R Yang, SJ Smith, ... Science 367 (6479), 810-814, 2020	102	2020
Charting a path to success in virtual screening S Forli Molecules 20 (10), 18732-18758, 2015	87	2015

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