Erik van Nimwegen

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Mihaela ZavolanProfessor of Computational Biology, Biozentrum, University of BaselPatvirtintas el. paštas unibas.ch
Piotr J BalwierzPostdoctoral Researcher, Imperial College LondonPatvirtintas el. paštas imperial.ac.uk
James CrutchfieldDistinguished Professor of Physics, University of California at DavisPatvirtintas el. paštas ucdavis.edu
Dirk SchübelerDirector, Friedrich Miescher Institute for Biomedical Research, Basel, SwitzerlandPatvirtintas el. paštas fmi.ch
Lukas BurgerResearch Associate, Friedrich Miescher Institute for Biomedical ResearchPatvirtintas el. paštas fmi.ch
Robert IvanekHead of Bioinformatics at the Department of Biomedicine, University of BaselPatvirtintas el. paštas unibas.ch
Olin SilanderSenior Research Fellow, Liggins Institute, University of AucklandPatvirtintas el. paštas auckland.ac.nz
Andreas J. GruberUniversity of KonstanzPatvirtintas el. paštas uni-konstanz.de
Eric SiggiaRockefeller UniversityPatvirtintas el. paštas cornell.edu
Thomas JulouBiozentrum BaselPatvirtintas el. paštas normalesup.org
Nacho MolinaIGBMC - CNRS - INSERM - University of StrasbourgPatvirtintas el. paštas igbmc.fr
Ionas ErbCentre for Genomic Regulation (CRG), BarcelonaPatvirtintas el. paštas crg.eu
Martijn HuynenMBS, Radboud University Medical CentrePatvirtintas el. paštas radboudumc.nl
Carsten O. DaubAssociate Professor, Karolinska InstitutetPatvirtintas el. paštas ki.se
Nikolaus RajewskyProfessor, Systems Biology, Max Delbruck Center for Molecular Medicine, BerlinPatvirtintas el. paštas mdc-berlin.de
Carninci PieroRIKEN IMS (Yokohama, JP) and Human Technopole (Milan, IT)Patvirtintas el. paštas postman.riken.jp
Jeremie BredaEPFLPatvirtintas el. paštas epfl.ch
Christian BeiselHead Genomics Facility Basel, ETH ZurichPatvirtintas el. paštas bsse.ethz.ch
Christoph HandschinUniversity of Basel, BiozentrumPatvirtintas el. paštas unibas.ch
Jean HausserKarolinska Institutet & SciLifeLabPatvirtintas el. paštas ki.se

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Erik van Nimwegen

Professor of computational systems biology, Biozentrum, University of Basel

Patvirtintas el. paštas unibas.ch - Pagrindinis puslapis

computational biology genomics systems biology transcription regulation genome evolution


Pavadinimas Rūšiuoti pagal šaltinius Rūšiuoti pagal metus Rūšiuoti pagal pavadinimą	Cituota Cituota	Metai
The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005	4043	2005
A promoter-level mammalian expression atlas Nature 507 (7493), 462-470, 2014	1812	2014
DNA-binding factors shape the mouse methylome at distal regulatory regions MB Stadler, R Murr, L Burger, R Ivanek, F Lienert, A Schöler, E Nimwegen, ... Nature 480 (7378), 490-495, 2011	1541	2011
An atlas of combinatorial transcriptional regulation in mouse and man T Ravasi, H Suzuki, CV Cannistraci, S Katayama, VB Bajic, K Tan, ... Cell 140 (5), 744-752, 2010	862	2010
Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes E Yang, E van Nimwegen, M Zavolan, N Rajewsky, M Schroeder, ... Genome research 13 (8), 1863-1872, 2003	783	2003
Neutral evolution of mutational robustness E Van Nimwegen, JP Crutchfield, M Huynen Proceedings of the National Academy of Sciences 96 (17), 9716-9720, 1999	704	1999
Sox4 is a master regulator of epithelial-mesenchymal transition by controlling Ezh2 expression and epigenetic reprogramming N Tiwari, VK Tiwari, L Waldmeier, PJ Balwierz, P Arnold, M Pachkov, ... Cancer cell 23 (6), 768-783, 2013	511	2013
Automated reconstruction of whole-genome phylogenies from short-sequence reads F Bertels, OK Silander, M Pachkov, PB Rainey, E Van Nimwegen Molecular biology and evolution 31 (5), 1077-1088, 2014	482	2014
Inference of miRNA targets using evolutionary conservation and pathway analysis D Gaidatzis, E van Nimwegen, J Hausser, M Zavolan BMC bioinformatics 8, 1-22, 2007	461	2007
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line Nature genetics 41 (5), 553-562, 2009	429	2009
Scaling laws in the functional content of genomes E van Nimwegen Trends in Genetics 19 (9), 479-484, 2003	400	2003
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny R Siddharthan, ED Siggia, E Van Nimwegen PLoS computational biology 1 (7), e67, 2005	373	2005
Adipose tissue microRNAs as regulators of CCL2 production in human obesity E Arner, N Mejhert, A Kulyté, PJ Balwierz, M Pachkov, M Cormont, ... Diabetes 61 (8), 1986-1993, 2012	345	2012
ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs PJ Balwierz, M Pachkov, P Arnold, AJ Gruber, M Zavolan, ... Genome research 24 (5), 869-884, 2014	334	2014
Tyrosine phosphatase SHP2 promotes breast cancer progression and maintains tumor-initiating cells via activation of key transcription factors and a positive feedback signaling loop N Aceto, N Sausgruber, H Brinkhaus, D Gaidatzis, G Martiny-Baron, ... Nature medicine 18 (4), 529-537, 2012	316	2012
Identification of clustered microRNAs using an ab initio prediction method A Sewer, N Paul, P Landgraf, A Aravin, S Pfeffer, MJ Brownstein, T Tuschl, ... BMC bioinformatics 6, 1-15, 2005	311	2005
A probabilistic method to detect regulatory modules S Sinha, E Van Nimwegen, ED Siggia Bioinformatics-Oxford 19 (1), 292-301, 2003	280	2003
The frequency distribution of gene family sizes in complete genomes. MA Huynen, E Van Nimwegen Molecular biology and evolution 15 (5), 583-589, 1998	270	1998
Accurate prediction of protein–protein interactions from sequence alignments using a Bayesian method L Burger, E Van Nimwegen Molecular systems biology 4 (1), 165, 2008	237	2008
Disentangling direct from indirect co-evolution of residues in protein alignments L Burger, E Van Nimwegen PLoS computational biology 6 (1), e1000633, 2010	235	2010

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