| The probability of parallel genetic evolution from standing genetic variation A MacPherson, SL Nuismer Journal of Evolutionary Biology 30 (2), 326-337, 2017 | 64 | 2017 |
| Unifying phylogenetic birth–death models in epidemiology and macroevolution A MacPherson, S Louca, A McLaughlin, JB Joy, MW Pennell Systematic Biology 71 (1), 172-189, 2022 | 57* | 2022 |
| Fundamental identifiability limits in molecular epidemiology S Louca, A McLaughlin, A MacPherson, JB Joy, MW Pennell Molecular biology and evolution 38 (9), 4010-4024, 2021 | 45 | 2021 |
| Keeping pace with the Red Queen: Identifying the genetic basis of susceptibility to infectious disease A MacPherson, SP Otto, SL Nuismer Genetics 208 (2), 779-789, 2018 | 35 | 2018 |
| The impact of sampling bias on viral phylogeographic reconstruction P Liu, Y Song, C Colijn, A MacPherson PLoS Global Public Health 2 (9), e0000577, 2022 | 32 | 2022 |
| Trait dimensionality explains widespread variation in local adaptation A MacPherson, PA Hohenlohe, SL Nuismer Proceedings of the Royal Society B: Biological Sciences 282 (1802), 20141570, 2015 | 32 | 2015 |
| Joint coevolutionary–epidemiological models dampen Red Queen cycles and alter conditions for epidemics A MacPherson, SP Otto Theoretical population biology 122, 137-148, 2018 | 30 | 2018 |
| Neo-sex chromosome evolution shapes sex-dependent asymmetrical introgression barrier S Wang, MJ Nalley, K Chatla, R Aldaimalani, A MacPherson, KHC Wei, ... Proceedings of the National Academy of Sciences 119 (19), e2119382119, 2022 | 24 | 2022 |
| Parental population range expansion before secondary contact promotes heterosis A MacPherson, S Wang, R Yamaguchi, LH Rieseberg, SP Otto The American Naturalist 200 (1), E1-E15, 2022 | 21 | 2022 |
| Crossing the threshold: gene flow, dominance and the critical level of standing genetic variation required for adaptation to novel environments SL Nuismer, A MacPherson, EB Rosenblum Journal of Evolutionary Biology 25 (12), 2665-2671, 2012 | 14 | 2012 |
| Feedback between coevolution and epidemiology can help or hinder the maintenance of genetic variation in host-parasite models A MacPherson, MJ Keeling, SP Otto Evolution 75 (3), 582-599, 2021 | 9 | 2021 |
| Coevolution fails to maintain genetic variation in a host–parasite model with constant finite population size A MacPherson, MJ Keeling, SP Otto Theoretical Population Biology 137, 10-21, 2021 | 9* | 2021 |
| Endemic does not mean constant as SARS-CoV-2 continues to evolve SP Otto, A MacPherson, C Colijn Evolution 78 (6), 1092-1108, 2024 | 5 | 2024 |
| Density-Dependent Selection during Range Expansion Affects Expansion Load in Life History Traits M Urquhart-Cronish, AL Angert, SP Otto, A MacPherson The American Naturalist 203 (3), 382-392, 2024 | 4 | 2024 |
| Reading Yule in light of the history and present of macroevolution M Pennell, A MacPherson Philosophical Transactions B 380 (1919), 20230299, 2025 | 3 | 2025 |
| Modeling and Theory in Population Biology NA Rosenberg, M Broom, E Huerta-Sanchez, SP Otto, A MacPherson, ... | 1 | 2024 |
| Unraveling adaptive evolutionary divergence at microgeographic scales E Clancey, A MacPherson, RG Cheek, JC Mouton, TS Sillett, ... The American Naturalist 203 (2), E35-E49, 2024 | 1 | 2024 |
| Endemic means change as SARS-CoV-2 evolves SP Otto, A MacPherson, C Colijn medRxiv, 2023.09. 28.23296264, 2023 | 1 | 2023 |
| The maintenance of genetic diversity under host–parasite coevolution in finite, structured populations MAE Peters, N Mideo, A MacPherson Journal of Evolutionary Biology 36 (9), 1328-1341, 2023 | 1 | 2023 |
| Unravelling Transmission in Epidemiological Models and its Role in the Disease-Diversity Relationship ME Toorians, A MacPherson, TJ Davies Preprints. org, 2021100295, 2021 | 1 | 2021 |