| A single-cell atlas of the tumor and immune ecosystem of human breast cancer J Wagner, MA Rapsomaniki, S Chevrier, T Anzeneder, C Langwieder, ... Cell 177 (5), 1330-1345. e18, 2019 | 720 | 2019 |
| easyFRAP: an interactive, easy-to-use tool for qualitative and quantitative analysis of FRAP data MA Rapsomaniki, P Kotsantis, IE Symeonidou, NN Giakoumakis, ... Bioinformatics 28 (13), 1800-1801, 2012 | 191 | 2012 |
| EasyFRAP-web: a web-based tool for the analysis of fluorescence recovery after photobleaching data G Koulouras, A Panagopoulos, MA Rapsomaniki, NN Giakoumakis, ... Nucleic acids research 46 (W1), W467-W472, 2018 | 162 | 2018 |
| Quantification of tumor heterogeneity: from data acquisition to metric generation A Kashyap, MA Rapsomaniki, V Barros, A Fomitcheva-Khartchenko, ... Trends in Biotechnology 40 (6), 647-676, 2022 | 72 | 2022 |
| CK1δ restrains lipin-1 induction, lipid droplet formation and cell proliferation under hypoxia by reducing HIF-1α/ARNT complex formation M Kourti, G Ikonomou, NN Giakoumakis, MA Rapsomaniki, U Landegren, ... Cellular signalling 27 (6), 1129-1140, 2015 | 52 | 2015 |
| CellCycleTRACER accounts for cell cycle and volume in mass cytometry data MA Rapsomaniki, XK Lun, S Woerner, M Laumanns, B Bodenmiller, ... Nature communications 9 (1), 632, 2018 | 44 | 2018 |
| Multi-step loading of human minichromosome maintenance proteins in live human cells IE Symeonidou, P Kotsantis, V Roukos, MA Rapsomaniki, HE Grecco, ... Journal of Biological Chemistry 288 (50), 35852-35867, 2013 | 40 | 2013 |
| Analysis of protein kinetics using fluorescence recovery after photobleaching (FRAP) NN Giakoumakis, MA Rapsomaniki, Z Lygerou Light Microscopy: Methods and Protocols, 243-267, 2017 | 30 | 2017 |
| ATHENA: analysis of tumor heterogeneity from spatial omics measurements AL Martinelli, MA Rapsomaniki Bioinformatics 38 (11), 3151-3153, 2022 | 23 | 2022 |
| IPP complex reinforces adhesion by relaying tension-dependent signals to inhibit integrin turnover KM Vakaloglou, G Chrysanthis, MA Rapsomaniki, Z Lygerou, CG Zervas Cell reports 14 (11), 2668-2682, 2016 | 21 | 2016 |
| Inference of protein kinetics by stochastic modeling and simulation of fluorescence recovery after photobleaching experiments MA Rapsomaniki, E Cinquemani, NN Giakoumakis, P Kotsantis, ... Bioinformatics 31 (3), 355-362, 2015 | 17 | 2015 |
| Matching single cells across modalities with contrastive learning and optimal transport F Gossi, P Pati, P Chouvardas, AL Martinelli, M Kruithof-de Julio, ... Briefings in bioinformatics 24 (3), bbad130, 2023 | 14* | 2023 |
| Accelerating histopathology workflows with generative AI-based virtually multiplexed tumour profiling P Pati, S Karkampouna, F Bonollo, E Compérat, M Radić, M Spahn, ... Nature Machine Intelligence, 1-17, 2024 | 13* | 2024 |
| Towards quantum-enabled cell-centric therapeutics S Basu, J Born, A Bose, S Capponi, D Chalkia, TA Chan, H Doga, ... arXiv preprint arXiv:2307.05734, 2023 | 11 | 2023 |
| Inference of the three-dimensional chromatin structure and its temporal behavior BC Cristescu, Z Borsos, J Lygeros, MR Martínez, MA Rapsomaniki arXiv preprint arXiv:1811.09619, 2018 | 9 | 2018 |
| Hybrid quantum-classical graph neural networks for tumor classification in digital pathology A Ray, D Madan, S Patil, P Pati, M Rapsomaniki, A Kohlakala, TR Dlamini, ... 2024 IEEE International Conference on Quantum Computing and Engineering (QCE …, 2024 | 5 | 2024 |
| A novel pre-miRNA classification approach for the prediction of microRNA genes KA Theofilatos, DA Kleftogiannis, MAV Rapsomaniki, VA Haidinis, ... Proceedings of the 10th IEEE International Conference on Information …, 2010 | 5 | 2010 |
| Spatial protein heterogeneity analysis in frozen tissues to evaluate tumor heterogeneity A Fomitcheva-Khartchenko, MA Rapsomaniki, B Sobottka, P Schraml, ... Plos one 16 (11), e0259332, 2021 | 4 | 2021 |
| In silico analysis of DNA re-replication across a complete genome reveals cell-to-cell heterogeneity and genome plasticity MA Rapsomaniki, S Maxouri, P Nathanailidou, MR Garrastacho, ... NAR genomics and bioinformatics 3 (1), lqaa112, 2021 | 4 | 2021 |
| Overcoming limitations in current measures of drug response may enable AI-driven precision oncology K Ovchinnikova, J Born, P Chouvardas, M Rapsomaniki, ... NPJ precision oncology 8 (1), 95, 2024 | 3 | 2024 |
Zoi LygerouProfessor, Medical School, University of Patras, GreecePatvirtintas el. paštas upatras.gr