Stebėti
Sjoerd de Vries
Sjoerd de Vries
Research Engineer, CMPLI, Paris
Patvirtintas el. paštas inserm.fr
Pavadinimas
Cituota
Cituota
Metai
The HADDOCK2. 2 web server: user-friendly integrative modeling of biomolecular complexes
GCP Van Zundert, J Rodrigues, M Trellet, C Schmitz, PL Kastritis, ...
Journal of molecular biology 428 (4), 720-725, 2016
27212016
The HADDOCK web server for data-driven biomolecular docking
SJ De Vries, M Van Dijk, AMJJ Bonvin
Nature protocols 5 (5), 883-897, 2010
15442010
HADDOCK versus HADDOCK: new features and performance of HADDOCK2. 0 on the CAPRI targets
SJ De Vries, ADJ Van Dijk, M Krzeminski, M van Dijk, A Thureau, V Hsu, ...
Proteins: structure, function, and bioinformatics 69 (4), 726-733, 2007
6802007
Motor imagery and stroke rehabilitation: a critical discussion
S De Vries, T Mulder
Journal of rehabilitation medicine 39 (1), 5-13, 2007
4712007
CPORT: a consensus interface predictor and its performance in prediction-driven docking with HADDOCK
SJ de Vries, AMJJ Bonvin
PloS one 6 (3), e17695, 2011
3592011
A comprehensive framework of E2–RING E3 interactions of the human ubiquitin–proteasome system
SJL Van Wijk, SJ De Vries, P Kemmeren, A Huang, R Boelens, ...
Molecular systems biology 5 (1), 295, 2009
2112009
WeNMR: structural biology on the grid
TA Wassenaar, M Van Dijk, N Loureiro-Ferreira, G Van Der Schot, ...
Journal of Grid Computing 10, 743-767, 2012
2102012
WHISCY: what information does surface conservation yield? Application to data‐driven docking
SJ de Vries, ADJ van Dijk, AMJJ Bonvin
Proteins: Structure, Function, and Bioinformatics 63 (3), 479-489, 2006
1822006
Building macromolecular assemblies by information-driven docking
E Karaca, ASJ Melquiond, SJ De Vries, PL Kastritis, AMJJ Bonvin
Molecular & Cellular Proteomics 9 (8), 1784-1794, 2010
1602010
How proteins get in touch: interface prediction in the study of biomolecular complexes
SJ de Vries, AMJJ Bonvin
Current protein and peptide science 9 (4), 394-406, 2008
1582008
Fully blind peptide-protein docking with pepATTRACT
CEM Schindler, SJ de Vries, M Zacharias
Structure 23 (8), 1507-1515, 2015
1162015
Data‐driven docking: HADDOCK's adventures in CAPRI
ADJ Van Dijk, SJ De Vries, C Dominguez, H Chen, HX Zhou, A Bonvin
Proteins: Structure, Function, and Bioinformatics 60 (2), 232-238, 2005
1112005
The pepATTRACT web server for blind, large-scale peptide–protein docking
SJ de Vries, J Rey, CEM Schindler, M Zacharias, P Tuffery
Nucleic Acids Research 45 (W1), W361-W364, 2017
1072017
A web interface for easy flexible protein-protein docking with ATTRACT
SJ de Vries, CEM Schindler, IC de Beauchêne, M Zacharias
Biophysical journal 108 (3), 462-465, 2015
1042015
Blind testing of routine, fully automated determination of protein structures from NMR data
A Rosato, JM Aramini, C Arrowsmith, A Bagaria, D Baker, A Cavalli, ...
Structure 20 (2), 227-236, 2012
862012
Defining the limits of homology modeling in information‐driven protein docking
J Rodrigues, ASJ Melquiond, E Karaca, M Trellet, M Van Dijk, ...
Proteins: Structure, Function, and Bioinformatics 81 (12), 2119-2128, 2013
782013
iATTRACT: Simultaneous global and local interface optimization for protein–protein docking refinement
CEM Schindler, SJ de Vries, M Zacharias
Proteins: Structure, Function, and Bioinformatics 83 (2), 248-258, 2015
652015
SeamDock: an interactive and collaborative online docking resource to assist small compound molecular docking
S Murail, SJ De Vries, J Rey, G Moroy, P Tufféry
Frontiers in molecular biosciences 8, 716466, 2021
622021
Chauvot de Beauchene I, Zacharias M. A web interface for easy flexible protein-protein docking with ATTRACT
SJ De Vries, CEM Schindler
Biophys. J 108 (3), 462-465, 2015
612015
Flexible docking and refinement with a coarse‐grained protein model using ATTRACT
S de Vries, M Zacharias
Proteins: Structure, Function, and Bioinformatics 81 (12), 2167-2174, 2013
582013
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Straipsniai 1–20