| Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data WA Kibbe, C Arze, V Felix, E Mitraka, E Bolton, G Fu, CJ Mungall, ... Nucleic acids research 43 (D1), D1071-D1078, 2015 | 644 | 2015 |
| Modeling sample variables with an Experimental Factor Ontology J Malone, E Holloway, T Adamusiak, M Kapushesky, J Zheng, ... Bioinformatics 26 (8), 1112-1118, 2010 | 601 | 2010 |
| ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression H Parkinson, M Kapushesky, N Kolesnikov, G Rustici, M Shojatalab, ... Nucleic acids research 37 (suppl_1), D868-D872, 2009 | 514 | 2009 |
| Open Targets: a platform for therapeutic target identification and validation G Koscielny, P An, D Carvalho-Silva, JA Cham, L Fumis, R Gasparyan, ... Nucleic acids research 45 (D1), D985-D994, 2017 | 509 | 2017 |
| ArrayExpress update—trends in database growth and links to data analysis tools G Rustici, N Kolesnikov, M Brandizi, T Burdett, M Dylag, I Emam, A Farne, ... Nucleic acids research 41 (D1), D987-D990, 2012 | 438 | 2012 |
| The ontology for biomedical investigations A Bandrowski, R Brinkman, M Brochhausen, MH Brush, B Bug, ... PloS one 11 (4), e0154556, 2016 | 413 | 2016 |
| ArrayExpress update—an archive of microarray and high-throughput sequencing-based functional genomics experiments H Parkinson, U Sarkans, N Kolesnikov, N Abeygunawardena, T Burdett, ... Nucleic acids research 39 (suppl_1), D1002-D1004, 2010 | 391 | 2010 |
| Expression Atlas update—a database of gene and transcript expression from microarray-and sequencing-based functional genomics experiments R Petryszak, T Burdett, B Fiorelli, NA Fonseca, M Gonzalez-Porta, ... Nucleic acids research 42 (D1), D926-D932, 2014 | 380 | 2014 |
| Modeling biomedical experimental processes with OBI RR Brinkman, M Courtot, D Derom, JM Fostel, Y He, P Lord, J Malone, ... Journal of biomedical semantics 1, 1-11, 2010 | 333 | 2010 |
| EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats J Ison, M Kalaš, I Jonassen, D Bolser, M Uludag, H McWilliam, J Malone, ... Bioinformatics 29 (10), 1325-1332, 2013 | 312 | 2013 |
| The EBI RDF platform: linked open data for the life sciences S Jupp, J Malone, J Bolleman, M Brandizi, M Davies, L Garcia, A Gaulton, ... Bioinformatics 30 (9), 1338-1339, 2014 | 302 | 2014 |
| Gene expression atlas at the European bioinformatics institute M Kapushesky, I Emam, E Holloway, P Kurnosov, A Zorin, J Malone, ... Nucleic acids research 38 (suppl_1), D690-D698, 2010 | 292 | 2010 |
| Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments M Kapushesky, T Adamusiak, T Burdett, A Culhane, A Farne, A Filippov, ... Nucleic acids research 40 (D1), D1077-D1081, 2012 | 187 | 2012 |
| MIREOT: The minimum information to reference an external ontology term M Courtot, F Gibson, AL Lister, J Malone, D Schober, RR Brinkman, ... Applied Ontology 6 (1), 23-33, 2011 | 156 | 2011 |
| Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data JA McMurry, N Juty, N Blomberg, T Burdett, T Conlin, N Conte, M Courtot, ... PLoS biology 15 (6), e2001414, 2017 | 154 | 2017 |
| CLO: the cell line ontology S Sarntivijai, Y Lin, Z Xiang, TF Meehan, AD Diehl, UD Vempati, ... Journal of biomedical semantics 5, 1-10, 2014 | 138 | 2014 |
| The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation J Malone, A Brown, AL Lister, J Ison, D Hull, H Parkinson, R Stevens Journal of biomedical semantics 5, 1-13, 2014 | 118 | 2014 |
| Data mining using rule extraction from Kohonen self-organising maps J Malone, K McGarry, S Wermter, C Bowerman Neural Computing & Applications 15 (1), 9-17, 2006 | 106 | 2006 |
| MIRO: guidelines for minimum information for the reporting of an ontology N Matentzoglu, J Malone, C Mungall, R Stevens Journal of biomedical semantics 9, 1-13, 2018 | 91 | 2018 |
| A simple standard for sharing ontological mappings (SSSOM) N Matentzoglu, JP Balhoff, SM Bello, C Bizon, M Brush, TJ Callahan, ... Database 2022, baac035, 2022 | 77 | 2022 |
Helen ParkinsonEuropean Bioinformatics Institute - Head of Knowledge Management Section, Senior ScientistPatvirtintas el. paštas ebi.ac.uk