Mikael Trellet

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Alexandre M.J.J. BonvinUtrecht universityPatvirtintas el. paštas uu.nl
Adrien MelquiondUniversity Medical Center Utrecht, NLPatvirtintas el. paštas umcutrecht.nl
João PGLM RodriguesPrincipal Scientist, Schrodinger IncPatvirtintas el. paštas schrodinger.com
Gydo Van ZundertSchrodingerPatvirtintas el. paštas schrodinger.com
Ezgi KaracaAssistant Professor, Izmir Biomedicine and Genome Center & DEUPatvirtintas el. paštas ibg.edu.tr
Marc van DijkSenior scientist, Vrije Universiteit AmsterdamPatvirtintas el. paštas vu.nl
Panagiotis KastritisProfessor of Integrative Structural Biochemistry, MLU Halle / ERA Chair for cryo-EM, NHRF, AthensPatvirtintas el. paštas bct.uni-halle.de
Sjoerd de VriesResearch Engineer, CMPLI, ParisPatvirtintas el. paštas inserm.fr
Anna VangoneLarge Molecule Research - RochePatvirtintas el. paštas uu.nl
Li C XueRadboud University Medical CenterPatvirtintas el. paštas radboudumc.nl
Cunliang GengNetherlands eScience CenterPatvirtintas el. paštas esciencecenter.nl
Zeynep KurkcuogluPhD Bogazici University, PostDoc Utrecht UniversityPatvirtintas el. paštas boun.edu.tr
Nicolas FéreyUniversité Paris Saclay, Associate professor in Computer SciencePatvirtintas el. paštas universite-paris-saclay.fr
Marc BaadenPrincipal Investigator at CNRSPatvirtintas el. paštas ibpc.fr
Irina S. MoreiraUniversity of Coimbra, Life Sciences Department; Center for Neuroscience and Cell BiologyPatvirtintas el. paštas cnc.uc.pt
Michael NilgesInstitut PasteurPatvirtintas el. paštas pasteur.fr
Siddarth NarasimhanScientist at WaveBreak TherapeuticsPatvirtintas el. paštas wavebreaktx.com
Koen M VisscherVrije Universiteit AmsterdamPatvirtintas el. paštas vu.nl
Marco Verlato, Ph.D.Istituto Nazionale di Fisica NuclearePatvirtintas el. paštas pd.infn.it
Antonio RosatoAssociate Professor of Chemistry, University of FlorencePatvirtintas el. paštas unifi.it

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Mikael Trellet

Fluigent

Patvirtintas el. paštas fluigent.com

microfluidics bioinformatics docking structural biology molecular modeling


Pavadinimas Rūšiuoti pagal šaltinius Rūšiuoti pagal metus Rūšiuoti pagal pavadinimą	Cituota Cituota	Metai
The HADDOCK2. 2 web server: user-friendly integrative modeling of biomolecular complexes GCP Van Zundert, J Rodrigues, M Trellet, C Schmitz, PL Kastritis, ... Journal of molecular biology 428 (4), 720-725, 2016	2721	2016
Posttranslational modification of pili upon cell contact triggers N. meningitidis dissemination J Chamot-Rooke, G Mikaty, C Malosse, M Soyer, A Dumont, J Gault, ... Science 331 (6018), 778, 2011	219	2011
A unified conformational selection and induced fit approach to protein-peptide docking M Trellet, ASJ Melquiond, AMJJ Bonvin PloS one 8 (3), e58769, 2013	200	2013
Large-scale prediction of binding affinity in protein–small ligand complexes: the PRODIGY-LIG web server A Vangone, J Schaarschmidt, P Koukos, C Geng, N Citro, ME Trellet, ... Bioinformatics 35 (9), 1585-1587, 2019	196	2019
Performance of HADDOCK and a simple contact-based protein–ligand binding affinity predictor in the D3R Grand Challenge 2 Z Kurkcuoglu, PI Koukos, N Citro, ME Trellet, J Rodrigues, IS Moreira, ... Journal of computer-aided molecular design 32, 175-185, 2018	130	2018
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019	128	2019
Clustering biomolecular complexes by residue contacts similarity JP Rodrigues, M Trellet, C Schmitz, P Kastritis, E Karaca, ASJ Melquiond, ... Proteins: Structure, Function, and Bioinformatics 80 (7), 1810-1817, 2012	127	2012
Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ... Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013	114	2013
pdb-tools: A swiss army knife for molecular structures JP Rodrigues, JMC Teixeira, M Trellet, AMJJ Bonvin F1000Research 7, 1961, 2018	102	2018
SpotOn: high accuracy identification of protein-protein interface hot-spots IS Moreira, PI Koukos, R Melo, JG Almeida, AJ Preto, J Schaarschmidt, ... Scientific reports 7 (1), 8007, 2017	98	2017
Defining the limits of homology modeling in information‐driven protein docking J Rodrigues, ASJ Melquiond, E Karaca, M Trellet, M Van Dijk, ... Proteins: Structure, Function, and Bioinformatics 81 (12), 2119-2128, 2013	78	2013
The HADDOCK2. 4 web server for integrative modeling of biomolecular complexes RV Honorato, ME Trellet, B Jiménez-García, JJ Schaarschmidt, M Giulini, ... Nature protocols 19 (11), 3219-3241, 2024	65	2024
Sense and simplicity in HADDOCK scoring: Lessons from CASP‐CAPRI round 1 A Vangone, J Rodrigues, LC Xue, GCP Van Zundert, C Geng, ... Proteins: Structure, Function, and Bioinformatics 85 (3), 417-423, 2017	63	2017
The DisVis and PowerFit web servers: explorative and integrative modeling of biomolecular complexes GCP Van Zundert, M Trellet, J Schaarschmidt, Z Kurkcuoglu, M David, ... Journal of molecular biology 429 (3), 399-407, 2017	61	2017
Inhibition of the integrated stress response by viral proteins that block p-eIF2–eIF2B association HH Rabouw, LJ Visser, TC Passchier, MA Langereis, F Liu, P Giansanti, ... Nature Microbiology 5 (11), 1361-1373, 2020	45	2020
Sharing data from molecular simulations M Abraham, R Apostolov, J Barnoud, P Bauer, C Blau, AMJJ Bonvin, ... Journal of Chemical Information and Modeling 59 (10), 4093-4099, 2019	39	2019
Semantics for an integrative and immersive pipeline combining visualization and analysis of molecular data M Trellet, N Férey, J Flotyński, M Baaden, P Bourdot Journal of integrative bioinformatics 15 (2), 20180004, 2018	30	2018
PDB‐tools Web: A User‐friendly Interface for the Manipulation of PDB Files B Jiménez‐García, JMC Teixeira, M Trellet, JP Rodrigues, AMJJ Bonvin Proteins: Structure, Function, and Bioinformatics 89 (3), 330-335, 2021	25	2021
Folding then binding vs folding through binding in macrocyclic peptide inhibitors of human pancreatic α-amylase L Goldbach, BJA Vermeulen, S Caner, M Liu, C Tysoe, L van Gijzel, ... ACS chemical biology 14 (8), 1751-1759, 2019	24	2019
Computational peptidology P Zhou, J Huang Humana Press, 2015	24	2015

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