| Inferring gene regulatory networks from gene expression data by PC-algorithm based on conditional mutual information X Zhang, XM Zhao, K He, L Lu, Y Cao, J Liu, JK Hao, ZP Liu, L Chen Bioinformatics, 2011 | 370 | 2011 |
| APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility JF Xia, XM Zhao, J Song, DS Huang BMC bioinformatics 11, 1-14, 2010 | 225 | 2010 |
| Prediction of drug combinations by integrating molecular and pharmacological data XM Zhao, M Iskar, G Zeller, M Kuhn, V Van Noort, P Bork PLoS computational biology 7 (12), e1002323, 2011 | 218 | 2011 |
| Associations of social isolation and loneliness with later dementia C Shen, ET Rolls, W Cheng, J Kang, G Dong, C Xie, XM Zhao, ... Neurology 99 (2), e164-e175, 2022 | 190 | 2022 |
| OGEE v2: an update of the online gene essentiality database with special focus on differentially essential genes in human cancer cell lines WH Chen, G Lu, X Chen, XM Zhao, P Bork Nucleic acids research, gkw1013, 2016 | 187 | 2016 |
| Protein classification with imbalanced data XM Zhao, X Li, L Chen, K Aihara Proteins: Structure, Function, and Bioinformatics 70 (4), 1125-1132, 2008 | 175 | 2008 |
| Victors: a web-based knowledge base of virulence factors in human and animal pathogens S Sayers, L Li, E Ong, S Deng, G Fu, Y Lin, B Yang, S Zhang, Z Fa, ... Nucleic acids research 47 (D1), D693-D700, 2019 | 173 | 2019 |
| DeepPhos: prediction of protein phosphorylation sites with deep learning F Luo, M Wang, Y Liu, XM Zhao, A Li Bioinformatics 35 (16), 2766-2773, 2019 | 167 | 2019 |
| Uncovering signal transduction networks from high-throughput data by integer linear programming XM Zhao, RS Wang, L Chen, K Aihara Nucleic acids research 36 (9), e48-e48, 2008 | 162 | 2008 |
| NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference X Zhang, K Liu, ZP Liu, B Duval, JM Richer, XM Zhao, JK Hao, L Chen Bioinformatics 29 (1), 106-113, 2013 | 161 | 2013 |
| Conditional mutual inclusive information enables accurate quantification of associations in gene regulatory networks X Zhang, J Zhao, JK Hao, XM Zhao, L Chen Nucleic acids research 43 (5), e31-e31, 2015 | 157 | 2015 |
| Towards the biogeography of prokaryotic genes LP Coelho, R Alves, ÁR Del Río, PN Myers, CP Cantalapiedra, ... Nature 601 (7892), 252-256, 2022 | 147 | 2022 |
| Identifying dysregulated pathways in cancers from pathway interaction networks KQ Liu, ZP Liu, JK Hao, L Chen, XM Zhao BMC bioinformatics 13, 1-11, 2012 | 137 | 2012 |
| Drug discovery in the age of systems biology: the rise of computational approaches for data integration M Iskar, G Zeller, XM Zhao, V van Noort, P Bork Current Opinion in Biotechnology, 2011 | 135 | 2011 |
| GMrepo: a database of curated and consistently annotated human gut metagenomes S Wu, C Sun, Y Li, T Wang, L Jia, S Lai, Y Yang, P Luo, D Dai, YQ Yang, ... Nucleic acids research 48 (D1), D545-D553, 2020 | 126 | 2020 |
| Gene function prediction using labeled and unlabeled data XM Zhao, Y Wang, L Chen, K Aihara BMC bioinformatics 9, 1-14, 2008 | 120 | 2008 |
| Identifying disease genes and module biomarkers by differential interactions X Liu, ZP Liu, XM Zhao, L Chen Journal of the American Medical Informatics Association 19 (2), 241-248, 2012 | 116 | 2012 |
| A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments S Pan, C Zhu, XM Zhao, LP Coelho Nature communications 13 (1), 2326, 2022 | 109 | 2022 |
| PPIM: a protein-protein interaction database for maize G Zhu, A Wu, XJ Xu, PP Xiao, L Lu, J Liu, Y Cao, L Chen, J Wu, XM Zhao Plant physiology 170 (2), 618-626, 2016 | 104 | 2016 |
| Global gene profiling of laser-captured pollen mother cells indicates molecular pathways and gene subfamilies involved in rice meiosis X Tang, ZY Zhang, WJ Zhang, XM Zhao, X Li, D Zhang, QQ Liu, WH Tang Plant physiology 154 (4), 1855-1870, 2010 | 104 | 2010 |
Luonan ChenProfessor of Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of SciencesPatvirtintas el. paštas sibs.ac.cn