| Selecting between-sample RNA-Seq normalization methods from the perspective of their assumptions C Evans, J Hardin, DM Stoebel Briefings in bioinformatics 19 (5), 776-792, 2018 | 394 | 2018 |
| Anti-silencing: overcoming H-NS-mediated repression of transcription in Gram-negative enteric bacteria DM Stoebel, A Free, CJ Dorman Microbiology 154 (9), 2533-2545, 2008 | 337 | 2008 |
| The Cost of Expression of Escherichia coli lac Operon Proteins Is in the Process, Not in the Products DM Stoebel, AM Dean, DE Dykhuizen Genetics 178 (3), 1653-1660, 2008 | 269 | 2008 |
| Compensatory Evolution of Gene Regulation in Response to Stress by Escherichia coli Lacking RpoS DM Stoebel, K Hokamp, MS Last, CJ Dorman PLoS genetics 5 (10), e1000671, 2009 | 113 | 2009 |
| DNA supercoiling is differentially regulated by environmental factors and FIS in Escherichia coli and Salmonella enterica ADS Cameron, DM Stoebel, CJ Dorman Molecular microbiology 80 (1), 85-101, 2011 | 102 | 2011 |
| Diminishing-returns epistasis decreases adaptability along an evolutionary trajectory A Wünsche, DM Dinh, RS Satterwhite, CD Arenas, DM Stoebel, ... Nature ecology & evolution 1 (4), 0061, 2017 | 97 | 2017 |
| Genome-wide transcriptional response to varying RpoS levels in Escherichia coli K-12 GT Wong, RP Bonocora, AN Schep, SM Beeler, AJ Lee Fong, LM Shull, ... Journal of bacteriology 199 (7), 10.1128/jb. 00755-16, 2017 | 93 | 2017 |
| Genetic background affects epistatic interactions between two beneficial mutations Y Wang, C Diaz Arenas, DM Stoebel, TF Cooper Biology letters 9 (1), 20120328, 2013 | 53 | 2013 |
| The Effect of Mobile Element IS10 on Experimental Regulatory Evolution in Escherichia coli DM Stoebel, CJ Dorman Molecular Biology and Evolution 27 (9), 2105-2112, 2010 | 52 | 2010 |
| Benefit of transferred mutations is better predicted by the fitness of recipients than by their ecological or genetic relatedness Y Wang, C Diaz Arenas, DM Stoebel, K Flynn, E Knapp, MM Dillon, ... Proceedings of the National Academy of Sciences 113 (18), 5047-5052, 2016 | 48 | 2016 |
| Lack of Evidence for Horizontal Transfer of the lac Operon into Escherichia coli DM Stoebel Molecular biology and evolution 22 (3), 683-690, 2005 | 30 | 2005 |
| Redefining the H-NS protein family: a diversity of specialized core and accessory forms exhibit hierarchical transcriptional network integration S Fitzgerald, SC Kary, EY Alshabib, KD MacKenzie, DM Stoebel, ... Nucleic Acids Research 48 (18), 10184-10198, 2020 | 29 | 2020 |
| Escherichia coli Lacking RpoS Are Rare in Natural Populations of Non-Pathogens E Snyder, DM Gordon, DM Stoebel G3: Genes| Genomes| Genetics 2 (11), 1341-1344, 2012 | 27 | 2012 |
| Size doesn't matter: Microbial selection experiments address ecological phenomena M Feldgarden, DM Stoebel, D Brisson, DE Dykhuizen Ecology 84 (7), 1679-1687, 2003 | 20 | 2003 |
| xenoGI: reconstructing the history of genomic island insertions in clades of closely related bacteria EC Bush, AE Clark, CA DeRanek, A Eng, J Forman, K Heath, AB Lee, ... BMC bioinformatics 19, 1-11, 2018 | 14 | 2018 |
| History in the education of scientists: Encouraging judgment and social action V Hamilton, DM Stoebel Isis 111 (3), 623-630, 2020 | 6 | 2020 |
| The timing of transcription of RpoS-dependent genes varies across multiple stresses in Escherichia coli K-12 J Adams, J Hoang, E Petroni, E Ashby, J Hardin, DM Stoebel Msystems 8 (5), e00663-23, 2023 | 4 | 2023 |
| Waste and yet want not DM Stoebel, DE Dykhuizen Molecular cell 38 (5), 625-626, 2010 | 3 | 2010 |
| Cra and cAMP Receptor Protein Have Opposing Roles in the Regulation of fruB in Vibrio cholerae C Beck, S Perry, DM Stoebel, JM Liu Journal of bacteriology 203 (10), 10.1128/jb. 00044-21, 2021 | 2 | 2021 |
| The transcriptional response of genes to RpoS concentration in Escherichia coli is not determined by core promoter sequences SM Beeler, CR Doering, S Tran, DM Stoebel bioRxiv, 796656, 2019 | 2 | 2019 |
Charles J DormanTrinity College Dublin, Microbiology DepartmentPatvirtintas el. paštas tcd.ie