| TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data A Colaprico, TC Silva, C Olsen, L Garofano, C Cava, D Garolini, ... Nucleic acids research, gkv1507, 2015 | 3267 | 2015 |
| New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx M Mounir, M Lucchetta, TC Silva, C Olsen, G Bontempi, X Chen, ... PLoS computational biology 15 (3), e1006701, 2019 | 431 | 2019 |
| Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics L Ding, MH Bailey, E Porta-Pardo, V Thorsson, A Colaprico, D Bertrand, ... Cell, 2018 | 398 | 2018 |
| Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen Nature Communications, 2019 | 325 | 2019 |
| PharmacoGx: an R package for analysis of large pharmacogenomic datasets P Smirnov, Z Safikhani, N El-Hachem, D Wang, A She, C Olsen, ... Bioinformatics, btv723, 2015 | 283 | 2015 |
| mRMRe: an R package for parallelized mRMR ensemble feature selection N De Jay, S Papillon-Cavanagh, C Olsen, N El-Hachem, G Bontempi, ... Bioinformatics 29 (18), 2365-2368, 2013 | 279 | 2013 |
| TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages TC Silva, A Colaprico, C Olsen, F D'Angelo, G Bontempi, M Ceccarelli, ... F1000Research 5, 2016 | 272 | 2016 |
| Portraying breast cancers with long noncoding RNAs O Van Grembergen, M Bizet, J Eric, E Calonne, P Putmans, S Brohée, ... Science Advances 2 (9), e1600220, 2016 | 120 | 2016 |
| On the impact of entropy estimation on transcriptional regulatory network inference based on mutual information O Catharina, M Patrick E, B Gianluca EURASIP Journal on Bioinformatics and Systems Biology 2009, 2009 | 99* | 2009 |
| Interpreting pathways to discover cancer driver genes with Moonlight A Colaprico, C Olsen, MH Bailey, GJ Odom, T Terkelsen, TC Silva, ... Nature Communications 11 (1), 1-17, 2020 | 93 | 2020 |
| Comparison and validation of genomic predictors for anticancer drug sensitivity S Papillon-Cavanagh, N De Jay, N Hachem, C Olsen, G Bontempi, ... Journal of the American Medical Informatics Association 20 (4), 597-602, 2013 | 82 | 2013 |
| Inference and validation of predictive gene networks from biomedical literature and gene expression data C Olsen, K Fleming, N Prendergast, R Rubio, F Emmert-Streib, ... Genomics 103 (5), 329-336, 2014 | 57 | 2014 |
| NetBenchmark: a bioconductor package for reproducible benchmarks of gene regulatory network inference PEM P Bellot, C Olsen, P Salembier, A Oliveras-Vergés BMC Bioinformatics, 2015 | 55 | 2015 |
| SpidermiR: An R/Bioconductor Package for Integrative Analysis with miRNA Data C Cava, A Colaprico, G Bertoli, A Graudenzi, TC Silva, C Olsen, ... International Journal of Molecular Sciences 18 (2), 274, 2017 | 52 | 2017 |
| Applied Statistics for Network Biology: Methods in Systems Biology PE Meyer, C Olsen, G Bontempi | 51 | 2011 |
| Integration of multiple networks and pathways identifies cancer driver genes in pan-cancer analysis C Cava, G Bertoli, A Colaprico, C Olsen, G Bontempi, I Castiglioni BMC genomics 19 (1), 25, 2018 | 40 | 2018 |
| Predictive networks: a flexible, open source, web application for integration and analysis of human gene networks B Haibe-Kains, C Olsen, A Djebbari, G Bontempi, M Correll, C Bouton, ... Nucleic acids research 40 (D1), D866-D875, 2012 | 38 | 2012 |
| TCGAbiolinksGUI: A graphical user interface to analyze GDC cancer molecular and clinical data TC Silva, A Colaprico, C Olsen, G Bontempi, M Ceccarelli, BP Berman, ... bioRxiv, 147496, 2017 | 26 | 2017 |
| Inferring causal relationships using informationtheoretic measures C Olsen, PE Meyer, G Bontempi Proceedings of the 5th Benelux Bioinformatics Conference (BBC09), 2009 | 10 | 2009 |
| Micro RNA in Semen/Urine from Non-Obstructive Azoospermia Patients as Biomarkers to Predict the Presence of Testicular Spermatozoa and Spermatogonia M Willems, C Devriendt, C Olsen, B Caljon, T Janssen, I Gies, ... Life 13 (3), 616, 2023 | 8 | 2023 |
