| VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center B Amos, C Aurrecoechea, M Barba, A Barreto, EY Basenko, R Belnap, ... Nucleic Acids Research 50 (D1), D898-D911, 2022 | 397 | 2022 |
| FungiDB: an integrated bioinformatic resource for fungi and oomycetes EY Basenko, JA Pulman, A Shanmugasundram, OS Harb, K Crouch, ... Journal of Fungi 4 (1), 39, 2018 | 346 | 2018 |
| EuPathDB: the eukaryotic pathogen genomics database resource C Aurrecoechea, A Barreto, EY Basenko, J Brestelli, BP Brunk, S Cade, ... Nucleic acids research 45 (D1), D581-D591, 2017 | 223 | 2017 |
| EuPathDB: the eukaryotic pathogen genomics database resource S Warrenfeltz, EY Basenko, K Crouch, OS Harb, JC Kissinger, DS Roos, ... Eukaryotic Genomic Databases: Methods and Protocols, 69-113, 2018 | 86 | 2018 |
| Library of Apicomplexan Metabolic Pathways: a manually curated database for metabolic pathways of apicomplexan parasites A Shanmugasundram, FF Gonzalez-Galarza, JM Wastling, O Vasieva, ... Nucleic acids research 41 (D1), D706-D713, 2013 | 77 | 2013 |
| VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023 J Alvarez-Jarreta, B Amos, C Aurrecoechea, S Bah, M Barba, A Barreto, ... Nucleic acids research 52 (D1), D808-D816, 2024 | 75 | 2024 |
| TriTrypDB: An integrated functional genomics resource for kinetoplastida A Shanmugasundram, D Starns, U Böhme, B Amos, PA Wilkinson, ... PLOS Neglected Tropical Diseases 17 (1), e0011058, 2023 | 62 | 2023 |
| FungiDB: an integrated bioinformatic resource for fungi and oomycetes. J Fungi (Basel) 4: 39 EY Basenko, JA Pulman, A Shanmugasundram, OS Harb, K Crouch, ... | 45 | 2018 |
| ERK1/2 signaling dominates over RhoA signaling in regulating early changes in RNA expression induced by endothelin-1 in neonatal rat cardiomyocytes AK Marshall, OPT Barrett, TE Cullingford, A Shanmugasundram, ... PLoS One 5 (4), e10027, 2010 | 45 | 2010 |
| Ice-age climate adaptations trap the alpine marmot in a state of low genetic diversity TI Gossmann, A Shanmugasundram, S Börno, L Duvaux, C Lemaire, ... Current Biology 29 (10), 1712-1720. e7, 2019 | 31 | 2019 |
| A large‐scale proteogenomics study of apicomplexan pathogens—Toxoplasma gondii and Neospora caninum R Krishna, D Xia, S Sanderson, A Shanmugasundram, S Vermont, ... Proteomics 15 (15), 2618-2628, 2015 | 30 | 2015 |
| ‘Students-as-partners’ scheme enhances postgraduate students’ employability skills while addressing gaps in bioinformatics education LV Mello, L Tregilgas, G Cowley, A Gupta, F Makki, A Jhutty, ... Higher education pedagogies 2 (1), 43-57, 2017 | 21 | 2017 |
| Genome Assemblies across the Diverse Evolutionary Spectrum of Leishmania Protozoan Parasites WC Warren, NS Akopyants, DE Dobson, C Hertz-Fowler, LF Lye, PJ Myler, ... Microbiology Resource Announcements 10 (35), 10.1128/mra. 00545-21, 2021 | 13 | 2021 |
| What is new in FungiDB: a web-based bioinformatics platform for omics-scale data analysis for fungal and oomycete species EY Basenko, A Shanmugasundram, U Böhme, D Starns, PA Wilkinson, ... Genetics 227 (1), iyae035, 2024 | 8 | 2024 |
| FungiDB: an integrated Bioinformatic resource for Fungi and oomycetes. J Fungi. 2018; 4 (1): 39 E Basenko, J Pulman, A Shanmugasundram, O Harb, K Crouch, D Starns | 5 | |
| TriTrypDB: A web based resource offering the improvement of structural gene models of pathogenic kinetoplastids through community annotation using Apollo D Starns, A Shanmugasundram, K Crouch, O Harb, K Pepper, ... F1000Res 8, 434, 2019 | 2 | 2019 |
| An integrated approach to understand apicomplexan metabolism from their genomes A Shanmugasundram, FF Gonzalez-Galarza, JM Wastling, O Vasieva, ... BMC Bioinformatics 15, 1-2, 2014 | 1 | 2014 |
| Phenotype Ontologies Traversing All The Organisms (POTATO) workshop: 2nd edition N Matentzoglu, JP Balhoff, SM Bello, YM Bradford, LC Carmody, ... http://doi.org/10.5281/zenodo.3352149, 2019 | | 2019 |
| The response to past climate perturbations explains extremely low genetic diversity in the genome of an abundant ice-age remnant, the Alpine marmot S Börno, L Duvaux, S Klages, LD Roberts, S Schade, JM Gostner, ... | | 2018 |
| Genome annotation and metabolic reconstruction of apicomplexan parasites A Shanmugasundram University of Liverpool, 2014 | | 2014 |
