| Dynamic landscape and evolution of m6A methylation in human H Zhang, X Shi, T Huang, X Zhao, W Chen, N Gu, R Zhang Nucleic acids research 48 (11), 6251-6264, 2020 | 262 | 2020 |
| Comprehensive characterization of lncRNA-mRNA related ceRNA network across 12 major cancers Y Zhang, Y Xu, LI Feng, F Li, Z Sun, T Wu, X Shi, J Li, X Li Oncotarget 7 (39), 64148, 2016 | 178 | 2016 |
| The landscape of miRNA editing in animals and its impact on miRNA biogenesis and targeting L Li, Y Song, X Shi, J Liu, S Xiong, W Chen, Q Fu, Z Huang, N Gu, ... Genome research 28 (1), 132-143, 2018 | 108 | 2018 |
| Global prioritization of disease candidate metabolites based on a multi-omics composite network Q Yao, Y Xu, H Yang, D Shang, C Zhang, Y Zhang, Z Sun, X Shi, L Feng, ... Scientific reports 5 (1), 17201, 2015 | 51 | 2015 |
| ESEA: discovering the dysregulated pathways based on edge set enrichment analysis J Han, X Shi, Y Zhang, Y Xu, Y Jiang, C Zhang, L Feng, H Yang, D Shang, ... Scientific reports 5 (1), 13044, 2015 | 38 | 2015 |
| Spatiotemporal-specific lncRNAs in the brain, colon, liver and lung of macaque during development F Li, Y Xiao, F Huang, W Deng, H Zhao, X Shi, S Wang, X Yu, L Zhang, ... Molecular BioSystems 11 (12), 3253-3263, 2015 | 34 | 2015 |
| The LncRNA connectivity map: using LncRNA signatures to connect small molecules, LncRNAs, and diseases H Yang, D Shang, Y Xu, C Zhang, L Feng, Z Sun, X Shi, Y Zhang, J Han, ... Scientific Reports 7 (1), 6655, 2017 | 26 | 2017 |
| Subpathway-GMir: identifying miRNA-mediated metabolic subpathways by integrating condition-specific genes, microRNAs, and pathway topologies L Feng, Y Xu, Y Zhang, Z Sun, J Han, C Zhang, H Yang, D Shang, F Su, ... Oncotarget 6 (36), 39151, 2015 | 25 | 2015 |
| A global view of network of lncRNAs and their binding proteins D Shang, H Yang, Y Xu, Q Yao, W Zhou, X Shi, J Han, F Su, B Su, ... Molecular BioSystems 11 (2), 656-663, 2015 | 23 | 2015 |
| Subpathway-LNCE: Identify dysfunctional subpathways competitively regulated by lncRNAs through integrating lncRNA-mRNA expression profile and pathway topologies X Shi, Y Xu, C Zhang, L Feng, Z Sun, J Han, F Su, Y Zhang, C Li, X Li Oncotarget 7 (43), 69857, 2016 | 22 | 2016 |
| A novel dysregulated pathway-identification analysis based on global influence of within-pathway effects and crosstalk between pathways J Han, C Li, H Yang, Y Xu, C Zhang, J Ma, X Shi, W Liu, D Shang, Q Yao, ... Journal of The Royal Society Interface 12 (102), 20140937, 2015 | 21 | 2015 |
| MPINet: metabolite pathway identification via coupling of global metabolite network structure and metabolomic profile F Li, Y Xu, D Shang, H Yang, W Liu, J Han, Z Sun, Q Yao, C Zhang, J Ma, ... BioMed research international 2014 (1), 325697, 2014 | 19 | 2014 |
| Functional combination strategy for prioritization of human miRNA target J Li, Y Zhang, Y Wang, C Zhang, Q Wang, X Shi, C Li, R Zhang, X Li Gene 533 (1), 132-141, 2014 | 13 | 2014 |
| Human A-to-I RNA editing SNP loci are enriched in GWAS signals for autoimmune diseases and under balancing selection H Zhang, Q Fu, X Shi, Z Pan, W Yang, Z Huang, T Tang, X He, R Zhang Genome Biology 21, 1-16, 2020 | 10 | 2020 |
| Identification of a lncRNA involved functional module for esophageal cancer subtypes S Li, Y Xu, Z Sun, L Feng, D Shang, C Zhang, X Shi, J Han, F Su, H Yang, ... Molecular BioSystems 12 (11), 3312-3323, 2016 | 10 | 2016 |
| Dissecting dysfunctional crosstalk pathways regulated by miRNAs during glioma progression Y Zhang, Y Xu, F Li, X Li, L Feng, X Shi, L Wang, X Li Oncotarget 7 (18), 25769, 2016 | 8 | 2016 |
| Genome-wide characterization of RNA editing highlights roles of high editing events of glutamatergic synapse during mouse retinal development C Li, X Shi, J Yang, K Li, L Dai, Y Zhang, M Zhou, J Su Computational and Structural Biotechnology Journal 20, 2648-2656, 2022 | 5 | 2022 |
| How To Use SubpathwayLNCE X Shi, C Li, X Li | | 2016 |
| Supplementary Figure 3 Q Model | | |
