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Bassem Ben Cheikh
Bassem Ben Cheikh
Senior Data Scientist/Technical Group Lead
Geverifieerd e-mailadres voor akoyabio.com
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Gland segmentation in colon histology images: The glas challenge contest
K Sirinukunwattana, JPW Pluim, H Chen, X Qi, PA Heng, YB Guo, ...
Medical image analysis 35, 489-502, 2017
8902017
An N-Cadherin 2 expressing epithelial cell subpopulation predicts response to surgery, chemotherapy and immunotherapy in bladder cancer
KH Gouin III, N Ing, JT Plummer, CJ Rosser, B Ben Cheikh, C Oh, ...
Nature communications 12 (1), 4906, 2021
1182021
A spatially resolved single-cell genomic atlas of the adult human breast
T Kumar, K Nee, R Wei, S He, QH Nguyen, S Bai, K Blake, M Pein, ...
Nature 620 (7972), 181-191, 2023
1142023
Single-cell and spatial profiling identify three response trajectories to pembrolizumab and radiation therapy in triple negative breast cancer
SL Shiao, KH Gouin, N Ing, A Ho, R Basho, A Shah, RH Mebane, D Zitser, ...
Cancer Cell 42 (1), 70-84. e8, 2024
292024
Mapping the spatial proteome of head and neck tumors: key immune mediators and metabolic determinants in the tumor microenvironment
N Jhaveri, B Ben Cheikh, N Nikulina, N Ma, D Klymyshyn, J DeRosa, ...
GEN Biotechnology 2 (5), 418-434, 2023
262023
Compartmentalized spatial profiling of the tumor microenvironment in head and neck squamous cell carcinoma identifies immune checkpoint molecules and tumor necrosis factor …
A Sadeghirad, H., Liu, N., Monkman, J., Ma, N., Ben Cheikh, B., Tan, C.W ...
Frontiers in Immunology 14, 2023
222023
A tomographical reconstruction method from unknown direction projections for 2D gray-level images
BB Cheikh, E Baudrier, G Frey
Pattern Recognition Letters 86, 49-55, 2017
132017
A structure-based approach for colon gland segmentation in digital pathology
BB Cheikh, P Bertheau, D Racoceanu
Medical Imaging 2016: Digital Pathology 9791, 151-158, 2016
122016
A model of tumor architecture and spatial interactions with tumor microenvironment in breast carcinoma
BB Cheikh, C Bor-Angelier, D Racoceanu
Medical Imaging 2017: Digital Pathology 10140, 73-80, 2017
112017
Deep ultrahigh-plex spatial phenotyping of human cancer tissues
N Jhaveri, N Nikulina, H Zong, N Ma, BB Cheikh, A Pratapa, Y Kassim, ...
Cancer Research 82 (12_Supplement), 3877-3877, 2022
72022
Single-cell spatial multiomics reveals tumor microenvironment vulnerabilities in cancer resistance to immunotherapy
C Quek, A Pratapa, X Bai, G Al-Eryani, IP da Silva, A Mayer, N Bartonicek, ...
Cell Reports 43 (7), 2024
62024
A machine learning one-class logistic regression model to predict stemness for single cell transcriptomics and spatial omics
FS Dezem, M Marção, B Ben-Cheikh, N Nikulina, A Omotoso, D Burnett, ...
BMC genomics 24 (1), 717, 2023
52023
Single-cell spatial proteomic analysis by multiplexed imaging enables identification of microglial heterogeneity in Alzheimer’s disease human brain
P Sanchez-Molina, A Pratapa, N Nikulina, B Cheikh, J Singh, A Dhawan, ...
52023
Re: An N-Cadherin 2 Expressing Epithelial Cell Subpopulation Predicts Response to Surgery, Chemotherapy and Immunotherapy in Bladder Cancer
KH Gouin, N Ing, JT Plummer, CJ Rosser, B Ben Cheikh, C Oh, SS Chen, ...
JOURNAL OF UROLOGY 207 (4), 921-921, 2022
52022
Spatial interaction analysis with graph based mathematical morphology for histopathology
BB Cheikh, N Elie, B Plancoulaine, C Bor-Angelier, D Racoceanu
2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017 …, 2017
52017
Morphologie mathématique sur les graphes pour la caractérisation de l’organisation spatiale des structures histologiques dans les images haut-contenu: application au …
BB Cheikh
Paris 6, 2017
42017
Towards efficient collaborative digital pathology: a pioneer initiative of the FlexMIm project
D Racoceanu, D Ameisen, A Veillard, BB Cheikh, E Attieh, P Brezillon, ...
Diagnostic Pathology 1 (8), 2016
42016
Protocol for high-plex, whole-slide imaging of human formalin-fixed paraffin-embedded tissue using PhenoCycler-Fusion
ML Donovan, N Jhaveri, N Ma, BB Cheikh, J DeRosa, R Mihani, N Berrell, ...
STAR protocols 5 (3), 103226, 2024
32024
Graph-based approach for spatial heterogeneity analysis in tumor microenvironment
BB Cheikh, C Bor-Angelier, D Racoceanu
Diagnostic Pathology 1 (8), 2016
32016
Preliminary approach for crypt detection in Inflammatory Bowel Disease
BB Cheikh, P Bertheau, D Racoceanu
Journées RITS 2015, 138-139, 2015
32015
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Artikelen 1–20