Gland segmentation in colon histology images: The glas challenge contest K Sirinukunwattana, JPW Pluim, H Chen, X Qi, PA Heng, YB Guo, ... Medical image analysis 35, 489-502, 2017 | 890 | 2017 |
An N-Cadherin 2 expressing epithelial cell subpopulation predicts response to surgery, chemotherapy and immunotherapy in bladder cancer KH Gouin III, N Ing, JT Plummer, CJ Rosser, B Ben Cheikh, C Oh, ... Nature communications 12 (1), 4906, 2021 | 118 | 2021 |
A spatially resolved single-cell genomic atlas of the adult human breast T Kumar, K Nee, R Wei, S He, QH Nguyen, S Bai, K Blake, M Pein, ... Nature 620 (7972), 181-191, 2023 | 114 | 2023 |
Single-cell and spatial profiling identify three response trajectories to pembrolizumab and radiation therapy in triple negative breast cancer SL Shiao, KH Gouin, N Ing, A Ho, R Basho, A Shah, RH Mebane, D Zitser, ... Cancer Cell 42 (1), 70-84. e8, 2024 | 29 | 2024 |
Mapping the spatial proteome of head and neck tumors: key immune mediators and metabolic determinants in the tumor microenvironment N Jhaveri, B Ben Cheikh, N Nikulina, N Ma, D Klymyshyn, J DeRosa, ... GEN Biotechnology 2 (5), 418-434, 2023 | 26 | 2023 |
Compartmentalized spatial profiling of the tumor microenvironment in head and neck squamous cell carcinoma identifies immune checkpoint molecules and tumor necrosis factor … A Sadeghirad, H., Liu, N., Monkman, J., Ma, N., Ben Cheikh, B., Tan, C.W ... Frontiers in Immunology 14, 2023 | 22 | 2023 |
A tomographical reconstruction method from unknown direction projections for 2D gray-level images BB Cheikh, E Baudrier, G Frey Pattern Recognition Letters 86, 49-55, 2017 | 13 | 2017 |
A structure-based approach for colon gland segmentation in digital pathology BB Cheikh, P Bertheau, D Racoceanu Medical Imaging 2016: Digital Pathology 9791, 151-158, 2016 | 12 | 2016 |
A model of tumor architecture and spatial interactions with tumor microenvironment in breast carcinoma BB Cheikh, C Bor-Angelier, D Racoceanu Medical Imaging 2017: Digital Pathology 10140, 73-80, 2017 | 11 | 2017 |
Deep ultrahigh-plex spatial phenotyping of human cancer tissues N Jhaveri, N Nikulina, H Zong, N Ma, BB Cheikh, A Pratapa, Y Kassim, ... Cancer Research 82 (12_Supplement), 3877-3877, 2022 | 7 | 2022 |
Single-cell spatial multiomics reveals tumor microenvironment vulnerabilities in cancer resistance to immunotherapy C Quek, A Pratapa, X Bai, G Al-Eryani, IP da Silva, A Mayer, N Bartonicek, ... Cell Reports 43 (7), 2024 | 6 | 2024 |
A machine learning one-class logistic regression model to predict stemness for single cell transcriptomics and spatial omics FS Dezem, M Marção, B Ben-Cheikh, N Nikulina, A Omotoso, D Burnett, ... BMC genomics 24 (1), 717, 2023 | 5 | 2023 |
Single-cell spatial proteomic analysis by multiplexed imaging enables identification of microglial heterogeneity in Alzheimer’s disease human brain P Sanchez-Molina, A Pratapa, N Nikulina, B Cheikh, J Singh, A Dhawan, ... | 5 | 2023 |
Re: An N-Cadherin 2 Expressing Epithelial Cell Subpopulation Predicts Response to Surgery, Chemotherapy and Immunotherapy in Bladder Cancer KH Gouin, N Ing, JT Plummer, CJ Rosser, B Ben Cheikh, C Oh, SS Chen, ... JOURNAL OF UROLOGY 207 (4), 921-921, 2022 | 5 | 2022 |
Spatial interaction analysis with graph based mathematical morphology for histopathology BB Cheikh, N Elie, B Plancoulaine, C Bor-Angelier, D Racoceanu 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017 …, 2017 | 5 | 2017 |
Morphologie mathématique sur les graphes pour la caractérisation de l’organisation spatiale des structures histologiques dans les images haut-contenu: application au … BB Cheikh Paris 6, 2017 | 4 | 2017 |
Towards efficient collaborative digital pathology: a pioneer initiative of the FlexMIm project D Racoceanu, D Ameisen, A Veillard, BB Cheikh, E Attieh, P Brezillon, ... Diagnostic Pathology 1 (8), 2016 | 4 | 2016 |
Protocol for high-plex, whole-slide imaging of human formalin-fixed paraffin-embedded tissue using PhenoCycler-Fusion ML Donovan, N Jhaveri, N Ma, BB Cheikh, J DeRosa, R Mihani, N Berrell, ... STAR protocols 5 (3), 103226, 2024 | 3 | 2024 |
Graph-based approach for spatial heterogeneity analysis in tumor microenvironment BB Cheikh, C Bor-Angelier, D Racoceanu Diagnostic Pathology 1 (8), 2016 | 3 | 2016 |
Preliminary approach for crypt detection in Inflammatory Bowel Disease BB Cheikh, P Bertheau, D Racoceanu Journées RITS 2015, 138-139, 2015 | 3 | 2015 |