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Avinash Sreedasyam
Avinash Sreedasyam
Computational Biologist, HudsonAlpha Institute for Biotechnology
Geverifieerd e-mailadres voor hudsonalpha.org
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The genome sequence of segmental allotetraploid peanut Arachis hypogaea
DJ Bertioli, J Jenkins, J Clevenger, O Dudchenko, D Gao, G Seijo, ...
Nature genetics 51 (5), 877-884, 2019
5792019
The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
RF McCormick, SK Truong, A Sreedasyam, J Jenkins, S Shu, D Sims, ...
The Plant Journal 93 (2), 338-354, 2018
5472018
A mosaic monoploid reference sequence for the highly complex genome of sugarcane
O Garsmeur, G Droc, R Antonise, J Grimwood, B Potier, K Aitken, ...
Nature communications 9 (1), 2638, 2018
3922018
Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement
ZJ Chen, A Sreedasyam, A Ando, Q Song, LM De Santiago, ...
Nature genetics 52 (5), 525-533, 2020
3502020
DNA Cloning Strategies
LJ Cseke, G Trivedi, A Sreedasyam, PB Kaufman, A Kirakosyan
Handbook of Molecular and Cellular Methods in Biology and Medicine 3, 29-36, 2011
257*2011
Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass
JT Lovell, AH MacQueen, S Mamidi, J Bonnette, J Jenkins, JD Napier, ...
Nature 590 (7846), 438-444, 2021
2092021
GENESPACE tracks regions of interest and gene copy number variation across multiple genomes
JT Lovell, A Sreedasyam, ME Schranz, M Wilson, JW Carlson, A Harkess, ...
elife 11, e78526, 2022
1752022
A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci
S Mamidi, A Healey, P Huang, J Grimwood, J Jenkins, K Barry, ...
Nature Biotechnology 38 (10), 1203-1210, 2020
1442020
The genomic landscape of molecular responses to natural drought stress in Panicum hallii
JT Lovell, J Jenkins, DB Lowry, S Mamidi, A Sreedasyam, X Weng, ...
Nature communications 9 (1), 5213, 2018
1102018
A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa
BT Hofmeister, J Denkena, M Colomé-Tatché, Y Shahryary, R Hazarika, ...
Genome Biology 21, 1-27, 2020
1082020
The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data
PF Perroud, FB Haas, M Hiss, KK Ullrich, A Alboresi, M Amirebrahimi, ...
The Plant Journal 95 (1), 168-182, 2018
1072018
Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome
PE Larsen, A Sreedasyam, G Trivedi, GK Podila, LJ Cseke, FR Collart
BMC Systems Biology 5, 1-14, 2011
832011
The tepary bean genome provides insight into evolution and domestication under heat stress
SM Moghaddam, A Oladzad, C Koh, L Ramsay, JP Hart, S Mamidi, ...
Nature communications 12 (1), 2638, 2021
802021
Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
JT Lovell, NB Bentley, G Bhattarai, JW Jenkins, A Sreedasyam, Y Alarcon, ...
Nature communications 12 (1), 4125, 2021
752021
Gene-rich UV sex chromosomes harbor conserved regulators of sexual development
SB Carey, J Jenkins, JT Lovell, F Maumus, A Sreedasyam, AC Payton, ...
Science Advances 7 (27), eabh2488, 2021
752021
PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
N Fernandez‐Pozo, FB Haas, R Meyberg, KK Ullrich, M Hiss, PF Perroud, ...
The Plant Journal 102 (1), 165-177, 2020
752020
Soybean (Glycine max) Haplotype Map (GmHapMap): a universal resource for soybean translational and functional genomics
D Torkamaneh, J Laroche, B Valliyodan, L O’Donoughue, E Cober, ...
Plant biotechnology journal 19 (2), 324-334, 2021
642021
Drought responsive gene expression regulatory divergence between upland and lowland ecotypes of a perennial C4 grass
JT Lovell, S Schwartz, DB Lowry, EV Shakirov, JE Bonnette, X Weng, ...
Genome research 26 (4), 510-518, 2016
552016
Genome-wide analysis of lectin receptor-like kinases in Populus
Y Yang, J Labbé, W Muchero, X Yang, SS Jawdy, M Kennedy, J Johnson, ...
BMC genomics 17, 1-16, 2016
512016
Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics
AL Healey, B Piatkowski, JT Lovell, A Sreedasyam, SB Carey, S Mamidi, ...
Nature Plants 9 (2), 238-254, 2023
502023
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