| Protein folds vs. protein folding: Differing questions, different challenges SJ Chen, M Hassan, RL Jernigan, K Jia, D Kihara, A Kloczkowski, ... Proceedings of the National Academy of Sciences 120 (1), e2214423119, 2023 | 88 | 2023 |
| Improved global protein homolog detection with major gains in function identification M Kilinc, K Jia, RL Jernigan Proceedings of the National Academy of Sciences 120 (9), e2211823120, 2023 | 42 | 2023 |
| Knowledge-based entropies improve the identification of native protein structures K Sankar, K Jia, RL Jernigan Proceedings of the National Academy of Sciences 114 (11), 2928-2933, 2017 | 33 | 2017 |
| New amino acid substitution matrix brings sequence alignments into agreement with structure matches K Jia, RL Jernigan Proteins: Structure, Function, and Bioinformatics 89 (6), 671-682, 2021 | 24 | 2021 |
| Ribosome mechanics informs about mechanism MT Zimmermann, K Jia, RL Jernigan Journal of molecular biology 428 (5), 802-810, 2016 | 24 | 2016 |
| Directional force originating from ATP hydrolysis drives the GroEL conformational change J Liu, K Sankar, Y Wang, K Jia, RL Jernigan Biophysical journal 112 (8), 1561-1570, 2017 | 23 | 2017 |
| The use of experimental structures to model protein dynamics AR Katebi, K Sankar, K Jia, RL Jernigan Molecular Modeling of Proteins, 213-236, 2015 | 20 | 2015 |
| Functional protein dynamics directly from sequences K Jia, M Kilinc, RL Jernigan The Journal of Physical Chemistry B 127 (9), 1914-1921, 2023 | 9 | 2023 |
| Giants among Cnidaria: large nuclear genomes and rearranged mitochondrial genomes in siphonophores N Ahuja, X Cao, DT Schultz, N Picciani, A Lord, S Shao, K Jia, DR Burdick, ... Genome Biology and Evolution 16 (3), evae048, 2024 | 7 | 2024 |
| Protein language model performs efficient homology detection M Kilinc, K Jia, RL Jernigan bioRxiv, 2022.03. 10.483778, 2022 | 6 | 2022 |
| SeqStruct: A new amino acid similarity matrix based on sequence correlations and structural contacts yields sequence-structure congruence K Jia, RL Jernigan BioRxiv, 268904, 2018 | 3 | 2018 |
| New alignment method for remote protein sequences by the direct use of pairwise sequence correlations and substitutions K Jia, M Kilinc, RL Jernigan Frontiers in Bioinformatics 3, 1227193, 2023 | 2 | 2023 |
| Computational ways to enhance protein inhibitor design RL Jernigan, K Sankar, K Jia, E Faraggi, A Kloczkowski Frontiers in Molecular Biosciences 7, 607323, 2021 | 2 | 2021 |
| Improving the Annotations of JCVI-Syn3a Proteins M Kilinc, K Jia, RL Jernigan Prediction of Protein Secondary Structure, 153-168, 2024 | 1 | 2024 |
| Large-scale multiple inference of collective dependence with applications to protein function R Jernigan, K Jia, Z Ren, W Zhou The annals of applied statistics 15 (2), 902, 2021 | 1 | 2021 |
| Major advances in protein function assignment by remote homolog detection with protein language models–A review M Kilinc, K Jia, RL Jernigan Current Opinion in Structural Biology 90, 102984, 2025 | | 2025 |
| Characterizing interactions in E-cadherin assemblages S Shome, K Jia, S Sivasankar, RL Jernigan Biophysical Journal 122 (15), 3069-3077, 2023 | | 2023 |
| JSONWP: a static website generator for protein bioinformatics research M Kilinc, K Jia, RL Jernigan Bioinformatics Advances 3 (1), vbad154, 2023 | | 2023 |
| An improved protein sequence alignment algorithm scores pairs of substitutions M Kilinc, K Jia, RL Jernigan Biophysical Journal 121 (3), 180a, 2022 | | 2022 |
| Aggregation sickle hemoglobin V Anderson, PM Khade, A Kumar, K Jia, RL Jernigan Biophysical Journal 121 (3), 323a, 2022 | | 2022 |
Robert JerniganCurtiss Distinguished Professor in Biochemistry, Biophysics & Molecular Biology, Iowa StateGeverifieerd e-mailadres voor iastate.edu