| The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ... Cell 181 (2), 236-249, 2020 | 464 | 2020 |
| Signatures of plasticity, metastasis, and immunosuppression in an atlas of human small cell lung cancer JM Chan*, A Quintanal-Villalonga*, VR Gao*, Y Xie*, V Allaj, ... Cancer cell 39 (11), 1479-1496. e18, 2021 | 288 | 2021 |
| Tumor microenvironment-derived NRG1 promotes antiandrogen resistance in prostate cancer Z Zhang, WR Karthaus, YS Lee, VR Gao, C Wu, JW Russo, M Liu, ... Cancer cell 38 (2), 279-296. e9, 2020 | 211 | 2020 |
| Epigenetic plasticity cooperates with cell-cell interactions to direct pancreatic tumorigenesis C Burdziak, D Alonso-Curbelo, T Walle, J Reyes, FM Barriga, D Haviv, ... Science 380 (6645), eadd5327, 2023 | 100 | 2023 |
| Drivers of heterogeneity in synovial fibroblasts in rheumatoid arthritis MH Smith*, VR Gao*, PK Periyakoil, A Kochen, EF DiCarlo, SM Goodman, ... Nature Immunology, 1-11, 2023 | 69 | 2023 |
| A non-invasive artificial intelligence approach for the prediction of human blastocyst ploidy: a retrospective model development and validation study J Barnes, M Brendel, VR Gao, S Rajendran, J Kim, Q Li, JE Malmsten, ... The Lancet Digital Health 5 (1), e28-e40, 2023 | 67 | 2023 |
| Epiphany: predicting hi-c contact maps from 1d epigenomic signals R Yang*, A Das*, VR Gao, A Karbalayghareh, WS Noble, JA Bilmes, ... Genome Biology 24 (1), 1-26, 2023 | 37 | 2023 |
| Accelerating Batch Active Learning Using Continual Learning Techniques A Das*, G Bhatt*, M Bhalerao, VR Gao, R Yang, J Bilmes arXiv preprint arXiv:2305.06408, 2023 | 9 | 2023 |
| Epigenetic plasticity cooperates with cell-cell interactions to direct pancreatic tumorigenesis. Science 380, eadd5327 C Burdziak, D Alonso-Curbelo, T Walle, J Reyes, FM Barriga, D Haviv, ... | 8 | 2023 |
| Protocol to dissociate, process, and analyze the human lung tissue using single-cell RNA-seq Á Quintanal-Villalonga, JM Chan, I Masilionis, VR Gao, Y Xie, V Allaj, ... STAR protocols 3 (4), 101776, 2022 | 8 | 2022 |
| ChromaFold predicts the 3D contact map from single-cell chromatin accessibility VR Gao, R Yang, A Das, R Luo, H Luo, DR McNally, I Karagiannidis, ... Nature Communications 15 (1), 9432, 2024 | 7 | 2024 |
| Ex uno plures: Splitting one model into an ensemble of subnetworks Z Zhang, VR Gao, MR Sabuncu arXiv preprint arXiv:2106.04767, 2021 | 7 | 2021 |
| Epigenetic plasticity cooperates with emergent cell-cell interactions to drive neoplastic tissue remodeling in the pancreas C Burdziak, D Alonso-Curbelo, T Walle, FM Barriga, J Reyes, Y Xie, ... Biorxiv, 2022.07. 26.501417, 2022 | 4 | 2022 |
| Heterogeneity of Inflammation-associated Synovial Fibroblasts in Rheumatoid Arthritis and Its Drivers MH Smith*, VR Gao*, M Schizas, A Kochen, EF DiCarlo, SM Goodman, ... bioRxiv, 2022.02. 28.482131, 2022 | 3 | 2022 |
| Continual Active Learning AM Das*, G Bhatt*, MM Bhalerao, VR Gao, R Yang, J Bilmes | 2 | 2022 |
| Signatures of plasticity and immunosuppression in a single-cell atlas of human small cell lung cancer. JM Chan, A Quintanal-Villalonga, V Gao, V Allaj, I Masilionis, ... Journal of Clinical Oncology 39 (15_suppl), 8509-8509, 2021 | 1 | 2021 |
| Enhancing gazetteers for named entity recognition in conversational recommender systems N Dingwall*, VR Gao* Proceedings of the Joint KaRS & ComplexRec Workshop. CEUR-WS, 2021 | 1 | 2021 |
| Ensembles of low-rank expert adapters Y Li, V Gao, C Zhang, MA Torkamani arXiv preprint arXiv:2502.00089, 2025 | | 2025 |
| SCORE: Syntactic Code Representations for Static Script Malware Detection E Erdemir, K Park, MJ Morais, VR Gao, M Marschalek, Y Fan arXiv preprint arXiv:2411.08182, 2024 | | 2024 |
| Enhancing Security Control Production With Generative AI C Ling, M Ghashami, V Gao, A Torkamani, R Vaulin, N Mangam, B Jain, ... arXiv preprint arXiv:2411.04284, 2024 | | 2024 |