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Jere Koskela
Jere Koskela
Reader, School of Mathematics, Statistics and Physics, Newcastle University
Geverifieerd e-mailadres voor newcastle.ac.uk - Homepage
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Efficient ancestry and mutation simulation with msprime 1.0
F Baumdicker, G Bisschop, D Goldstein, G Gower, AP Ragsdale, ...
Genetics 220 (3), iyab229, 2022
2702022
Multi-locus data distinguishes between population growth and multiple merger coalescents
J Koskela
Statistical applications in genetics and molecular biology 17 (3), 20170011, 2018
292018
Bayesian inference of ancestral recombination graphs
A Mahmoudi, J Koskela, J Kelleher, Y Chan, D Balding
PLOS Computational Biology 18 (3), e1009960, 2022
242022
A general and efficient representation of ancestral recombination graphs
Y Wong, A Ignatieva, J Koskela, G Gorjanc, AW Wohns, J Kelleher
Genetics 228 (1), iyae100, 2024
222024
Sweepstakes reproductive success via pervasive and recurrent selective sweeps
E Árnason, J Koskela, K Halldórsdóttir, B Eldon
Elife 12, e80781, 2023
222023
Asymptotic genealogies of interacting particle systems with an application to sequential Monte Carlo
J Koskela, PA Jenkins, AM Johansen, D Spano
222020
Robust model selection between population growth and multiple merger coalescents
J Koskela, MW Berenguer
Mathematical biosciences 311, 1-12, 2019
222019
Computational inference beyond Kingman's coalescent
J Koskela, PA Jenkins, D Spano
Journal of Applied Probability 52 (2), 519-537, 2015
202015
Statistical tools for seed bank detection
J Blath, E Buzzoni, J Koskela, MW Berenguer
Theoretical Population Biology 132, 1-15, 2020
172020
Zig-zag sampling for discrete structures and nonreversible phylogenetic MCMC
J Koskela
Journal of Computational and Graphical Statistics 31 (3), 684-694, 2022
112022
Consistency of Bayesian nonparametric inference for discretely observed jump diffusions
J Koskela, D Spano, PA Jenkins
Bernoulli 25 (3), 2183-2205, 2019
112019
Inference and rare event simulation for stopped Markov processes via reverse-time sequential Monte Carlo
J Koskela, D Spano, PA Jenkins
Statistics and Computing 28 (1), 131-144, 2018
92018
The distribution of branch duration and detection of inversions in ancestral recombination graphs
A Ignatieva, M Favero, J Koskela, J Sant, SR Myers
82023
EWF: simulating exact paths of the Wright–Fisher diffusion
J Sant, PA Jenkins, J Koskela, D Spanò
Bioinformatics 39 (1), btad017, 2023
82023
Simple conditions for convergence of sequential Monte Carlo genealogies with applications
S Brown, PA Jenkins, AM Johansen, J Koskela
82021
Bayesian non-parametric inference for -coalescents: Posterior consistency and a parametric method
J Koskela, PA Jenkins, D Spanò
72018
Convergence of likelihood ratios and estimators for selection in nonneutral Wright–Fisher diffusions
J Sant, P A. Jenkins, J Koskela, D Spanò
Scandinavian Journal of Statistics 49 (4), 1728-1760, 2022
6*2022
Bernoulli factories and duality in Wright–Fisher and Allen–Cahn models of population genetics
J Koskela, K Łatuszyński, D Spanò
Theoretical Population Biology 156, 40-45, 2024
32024
Bayesian inference of reproduction number from epidemiological and genetic data using particle mcmc
A Gill, J Koskela, X Didelot, RG Everitt
arXiv preprint arXiv:2311.09838, 2023
32023
Weak convergence of non-neutral genealogies to Kingman’s coalescent
S Brown, PA Jenkins, AM Johansen, J Koskela
Stochastic Processes and their Applications 162, 76-105, 2023
32023
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Artikelen 1–20