| Genome-wide cell-free DNA mutational integration enables ultra-sensitive cancer monitoring A Zviran, RC Schulman, M Shah, STK Hill, S Deochand, CC Khamnei, ... Nature medicine 26 (7), 1114-1124, 2020 | 321 | 2020 |
| Early metazoan cell type diversity and the evolution of multicellular gene regulation A Sebé-Pedrós, E Chomsky, K Pang, D Lara-Astiaso, F Gaiti, Z Mukamel, ... Nature ecology & evolution 2 (7), 1176-1188, 2018 | 289 | 2018 |
| Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia F Gaiti, R Chaligne, H Gu, RM Brand, S Kothen-Hill, RC Schulman, ... Nature 569 (7757), 576-580, 2019 | 248 | 2019 |
| DNA methylation disruption reshapes the hematopoietic differentiation landscape F Izzo, SC Lee, A Poran, R Chaligne, F Gaiti, B Gross, RR Murali, ... Nature genetics 52 (4), 378-387, 2020 | 234 | 2020 |
| Epigenetic encoding, heritability and plasticity of glioma transcriptional cell states R Chaligne, F Gaiti, D Silverbush, JS Schiffman, HR Weisman, L Kluegel, ... Nature genetics 53 (10), 1469-1479, 2021 | 183 | 2021 |
| Deep conservation of the enhancer regulatory code in animals ES Wong, D Zheng, SZ Tan, NI Bower, V Garside, G Vanwalleghem, ... Science 370 (6517), eaax8137, 2020 | 141 | 2020 |
| Single-cell multi-omics of human clonal hematopoiesis reveals that DNMT3A R882 mutations perturb early progenitor states through selective hypomethylation AS Nam, N Dusaj, F Izzo, R Murali, RM Myers, TH Mouhieddine, J Sotelo, ... Nature genetics 54 (10), 1514-1526, 2022 | 91 | 2022 |
| Corrupted coordination of epigenetic modifications leads to diverging chromatin states and transcriptional heterogeneity in CLL A Pastore, F Gaiti, SX Lu, RM Brand, S Kulm, R Chaligne, H Gu, ... Nature communications 10 (1), 1874, 2019 | 79 | 2019 |
| Dynamic and widespread lncRNA expression in a sponge and the origin of animal complexity F Gaiti, SL Fernandez-Valverde, N Nakanishi, AD Calcino, I Yanai, ... Molecular Biology and Evolution, 2015 | 78 | 2015 |
| Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexity F Gaiti, K Jindrich, SL Fernandez-Valverde, K Roper, BM Degnan, ... eLife, 2017 | 65 | 2017 |
| Origin and evolution of the metazoan non-coding regulatory genome F Gaiti, AD Calcino, M Tanurdžić, BM Degnan Developmental biology 427 (2), 193-202, 2017 | 64 | 2017 |
| Smart-RRBS for single-cell methylome and transcriptome analysis H Gu, AT Raman, X Wang, F Gaiti, R Chaligne, AW Mohammad, ... Nature protocols 16 (8), 4004-4030, 2021 | 53 | 2021 |
| Single-cell multi-omics defines the cell-type-specific impact of splicing aberrations in human hematopoietic clonal outgrowths M Cortés-López, P Chamely, AG Hawkins, RF Stanley, AD Swett, ... Cell Stem Cell 30 (9), 1262-1281. e8, 2023 | 36 | 2023 |
| Sex Determination in Ceratopteris richardii Is Accompanied by Transcriptome Changes That Drive Epigenetic Reprogramming of the Young Gametophyte NM Atallah, O Vitek, F Gaiti, M Tanurdzic, JA Banks G3: Genes, Genomes, Genetics 8 (7), 2205-2214, 2018 | 31 | 2018 |
| De novo transcriptome assembly reveals high transcriptional complexity in Pisum sativum axillary buds and shows rapid changes in expression of diurnally … SC Kerr, F Gaiti, CA Beveridge, M Tanurdzic Bmc Genomics 18, 1-15, 2017 | 26 | 2017 |
| Deep learning mutation prediction enables early stage lung cancer detection in liquid biopsy ST Kothen-Hill, A Zviran, RC Schulman, S Deochand, F Gaiti, D Maloney, ... | 25 | 2018 |
| Long non-coding regulatory RNAs in sponges and insights into the origin of animal multicellularity F Gaiti, BM Degnan, M Tanurdžić RNA biology 15 (6), 696-702, 2018 | 20 | 2018 |
| Pre‐introduction introgression contributes to parallel differentiation and contrasting hybridization outcomes between invasive and native marine mussels I Popovic, N Bierne, F Gaiti, M Tanurdžić, C Riginos Journal of Evolutionary Biology 34 (1), 175-192, 2021 | 14 | 2021 |
| De novo plant Transcriptome assembly and annotation using Illumina RNA-Seq reads SC Kerr, F Gaiti, M Tanurdzic Plant Long Non-Coding RNAs: Methods and Protocols, 265-275, 2019 | 14 | 2019 |
| Sponge long non-coding RNAs are expressed in specific cell types and conserved networks F Gaiti, WL Hatleberg, M Tanurdžić, BM Degnan Non-coding RNA 4 (1), 6, 2018 | 14 | 2018 |
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