| Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 127 | 2019 |
| Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021 | 102 | 2021 |
| LZerD webserver for pairwise and multiple protein–protein docking C Christoffer, S Chen, V Bharadwaj, T Aderinwale, V Kumar, M Hormati, ... Nucleic acids research 49 (W1), W359-W365, 2021 | 70 | 2021 |
| Real-time structure search and structure classification for AlphaFold protein models T Aderinwale, V Bharadwaj, C Christoffer, G Terashi, Z Zhang, ... Communications biology 5 (1), 316, 2022 | 52 | 2022 |
| Detecting protein and DNA/RNA structures in cryo-EM maps of intermediate resolution using deep learning X Wang, E Alnabati, TW Aderinwale, SRMV Subramaniya, G Terashi, ... Biophysical Journal 120 (3), 81a, 2021 | 52 | 2021 |
| Multiple Myeloma DREAM Challenge reveals epigenetic regulator PHF19 as marker of aggressive disease MJ Mason, C Schinke, CLP Eng, F Towfic, F Gruber, A Dervan, BS White, ... Leukemia 34 (7), 1866-1874, 2020 | 46 | 2020 |
| Computational structure modeling for diverse categories of macromolecular interactions T Aderinwale, CW Christoffer, D Sarkar, E Alnabati, D Kihara Current opinion in structural biology 64, 1-8, 2020 | 32 | 2020 |
| Community assessment of the predictability of cancer protein and phosphoprotein levels from genomics and transcriptomics M Yang, F Petralia, Z Li, H Li, W Ma, X Song, S Kim, H Lee, H Yu, B Lee, ... Cell Systems 11 (2), 186-195. e9, 2020 | 28 | 2020 |
| SHREC 2020: Multi-domain protein shape retrieval challenge F Langenfeld, Y Peng, YK Lai, PL Rosin, T Aderinwale, G Terashi, ... Computers & Graphics 91, 189-198, 2020 | 19 | 2020 |
| RL-MLZerD: Multimeric protein docking using reinforcement learning T Aderinwale, C Christoffer, D Kihara Frontiers in Molecular Biosciences 9, 969394, 2022 | 17 | 2022 |
| Performance and enhancement of the LZerD protein assembly pipeline in CAPRI 38‐46 C Christoffer, G Terashi, WH Shin, T Aderinwale, ... Proteins: Structure, Function, and Bioinformatics 88 (8), 948-961, 2020 | 17 | 2020 |
| SHREC 2021: Retrieval and classification of protein surfaces equipped with physical and chemical properties A Raffo, U Fugacci, S Biasotti, W Rocchia, Y Liu, E Otu, R Zwiggelaar, ... Computers & Graphics 99, 1-21, 2021 | 15 | 2021 |
| Discriminating physiological from non‐physiological interfaces in structures of protein complexes: A community‐wide study H Schweke, Q Xu, G Tauriello, L Pantolini, T Schwede, F Cazals, ... Proteomics 23 (17), 2200323, 2023 | 14 | 2023 |
| Predicting clinical outcomes in neuroblastoma with genomic data integration I Baali, DAE Acar, TW Aderinwale, S HafezQorani, H Kazan Biology Direct 13, 1-14, 2018 | 13 | 2018 |
| Chauvot de Beauchene I MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Maigret, B, 1200-1221, 2019 | 7 | 2019 |
| Emap2sec+: detecting protein and DNA/RNA structures in Cryo-EM maps of intermediate resolution using deep learning X Wang, E Alnabati, TW Aderinwale, SRM Venkata Subramaniya, ... bioRxiv, 2020.08. 22.262675, 2020 | 5 | 2020 |
| Shape Classification of Building Information Models using Neural Networks. IE Evangelou, N Vitsas, G Papaioannou, M Georgioudakis, ... 3DOR, 1-4, 2021 | 3 | 2021 |
| Surface-based protein domains retrieval methods from a SHREC2021 challenge F Langenfeld, T Aderinwale, C Christoffer, WH Shin, G Terashi, X Wang, ... Journal of Molecular Graphics and Modelling 111, 108103, 2022 | 2 | 2022 |
| AFM-RL: Large Protein Complex Docking Using AlphaFold-Multimer and Reinforcement Learning T Aderinwale, R Jahandideh, Z Zhang, B Zhao, Y Xiong, D Kihara bioRxiv, 2024.01. 20.576386, 2024 | 1 | 2024 |
| SHREC 2021: Surface-based Protein Domains Retrieval. F Langenfeld, T Aderinwale, C Christoffer, WH Shin, G Terashi, X Wang, ... 3DOR, 19-26, 2021 | 1 | 2021 |
