Nithin C

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Janusz BujnickiProfessor of Biology, International Institute of Molecular and Cell Biology in WarsawGeverifieerd e-mailadres voor iimcb.gov.pl
Sunandan MukherjeeInternational Institute of Molecular and Cell Biology in Warsaw, PolandGeverifieerd e-mailadres voor iimcb.gov.pl
Ranjit BahadurProfessor, Department of Biotechnology, IIT Kharagpur, IndiaGeverifieerd e-mailadres voor hijli.iitkgp.ernet.in
Pritha GhoshSenior Clinical Scientist, ConcertAIGeverifieerd e-mailadres voor concertai.com
Tomasz Krzysztof WireckiPostdoctoral Researcher, Institute of Molecular and Cell Biology in WarsawGeverifieerd e-mailadres voor iimcb.gov.pl
Jolly BasakDepartment of Biotechnology, Visva- Bharati, Santiniketan, WB, IndiaGeverifieerd e-mailadres voor visva-bharati.ac.in
Danny IncarnatoAssistant Professor, University of GroningenGeverifieerd e-mailadres voor rug.nl
Amita BarikAssistant Professor, Department of Biotechnology, NIT DurgapurGeverifieerd e-mailadres voor nitdgp.ac.in
Amal ThomasUniversity of Southern CaliforniaGeverifieerd e-mailadres voor usc.edu
Sebastian KmiecikLaboratory of Computational Biology, Biological and Chemical Research Centre, University of WarsawGeverifieerd e-mailadres voor chem.uw.edu.pl
Michał BonieckiInternational Institute of Molecular and Cell Biology in WarsawGeverifieerd e-mailadres voor genesilico.pl
Dr. Nisha Patwa, Ph.DLouisiana State UniversityGeverifieerd e-mailadres voor lsu.edu
smita pillaAdiunkt (postdoctoral researcher)Geverifieerd e-mailadres voor uw.edu.pl
Astha JoshiStaff Scientist, Washington Uni of St. LouisGeverifieerd e-mailadres voor stanford.edu
Shi-Jie ChenUniversity of Missouri-ColumbiaGeverifieerd e-mailadres voor missouri.edu
Dong ZhangZhejiang UniversityGeverifieerd e-mailadres voor zju.edu.cn
Maciej AntczakAssociate Professor at Institute of Computing Science, Poznan University of TechnologyGeverifieerd e-mailadres voor cs.put.poznan.pl
Tomasz ZokPoznan University of TechnologyGeverifieerd e-mailadres voor cs.put.poznan.pl
Eric WesthofArchitecture et Réactivité de l'ARN Université de Strasbourg Institut de biologieGeverifieerd e-mailadres voor unistra.fr
Zhichao (Chichau) MiaoGuangzhou Laboratory, Guangzhou Medical UniversityGeverifieerd e-mailadres voor gzlab.ac.cn

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Nithin C

Andere namenChandran Nithin, Nithin Chandran

Assistant Professor (adiunkt), Biological and Chemical Research Centre, Department of Chemistry

Geverifieerd e-mailadres voor cnbc.uw.edu.pl - Homepage

Computational Biology Bioinformatics Structural Biology RNA Molecular modeling


Titel Sorteren op citaties Sorteren op jaar Sorteren op titel	Geciteerd door Geciteerd door	Jaar
Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements I Manfredonia, C Nithin, A Ponce-Salvatierra, P Ghosh, TK Wirecki, ... Nucleic Acids Research, gkaa1053, 2020	262*	2020
QRNAS: software tool for refinement of nucleic acid structures J Stasiewicz, S Mukherjee, C Nithin, JM Bujnicki BMC Structural Biology 19 (5), 1-11, 2019	74	2019
Targeting non-coding RNAs in plants with the CRISPR-Cas technology is a challenge yet worth accepting J Basak, C Nithin Frontiers in plant science 6, 1001, 2015	71	2015
Bioinformatics tools and benchmarks for computational docking and 3D structure prediction of RNA-protein complexes C Nithin, P Ghosh, JM Bujnicki Genes 9 (Computational Analysis of RNA Structure), 432, 2018	54	2018
Molecular architecture of protein-RNA recognition sites A Barik, C Nithin, SP Pilla, RP Bahadur Journal of Biomolecular Structure and Dynamics, 1-14, 2015	51	2015
Computational modeling of RNA 3D structure based on experimental data A Ponce-Salvatierra, Astha, K Merdas, C Nithin, P Ghosh, S Mukherjee, ... Bioscience Reports, 10.1042/BSR20180430, 2019	47	2019
A protein–RNA docking benchmark (I): Nonredundant cases A Barik, C Nithin, P Manasa, RP Bahadur Proteins: Structure, Function, and Bioinformatics 80 (7), 1866-1871, 2012	46	2012
Probing binding hot spots at protein–RNA recognition sites A Barik, C Nithin, NBR Karampudi, S Mukherjee, RP Bahadur Nucleic acids research 44 (2), e9-e9, 2016	39	2016
A non‐redundant protein–RNA docking benchmark version 2.0 C Nithin, S Mukherjee, RP Bahadur Proteins: Structure, Function, and Bioinformatics 85 (2), 256–267, 2017	37	2017
Genome-wide identification of miRNAs and lncRNAs in Cajanus cajan C Nithin, A Thomas, J Basak, RP Bahadur BMC genomics 18, 1-14, 2017	36	2017
Computational prediction of miRNAs and their targets in Phaseolus vulgaris using simple sequence repeat signatures C Nithin, N Patwa, A Thomas, RP Bahadur, J Basak BMC Plant Biology 15, 1-16, 2015	35	2015
MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexes AE Badaczewska-Dawid, C Nithin, K Wroblewski, M Kurcinski, S Kmiecik Nucleic Acids Research 50 (W1), W474-W482, 2022	26	2022
Identification and characterization of differentially expressed Phaseolus vulgaris miRNAs and their targets during mungbean yellow mosaic India virus infection reveals new … N Patwa, C Nithin, RP Bahadur, J Basak Genomics 111 (6), 1333-1342, 2018	21	2018
Modeling of Three-Dimensional RNA Structures Using SimRNA TK Wirecki, C Nithin, S Mukherjee, JM Bujnicki, MJ Boniecki Protein Structure Prediction (Part of the Methods in Molecular Biology book …, 2020	20	2020
Computational pipeline for reference-free comparative analysis of RNA 3D structures applied to SARS-CoV-2 UTR models J Gumna, M Antczak, RW Adamiak, JM Bujnicki, SJ Chen, F Ding, ... International Journal of Molecular Sciences 23 (17), 9630, 2022	18*	2022
Constrained peptides mimic a viral suppressor of RNA silencing A Kuepper, NM McLoughlin, S Neubacher, A Yeste-Vázquez, ... Nucleic acids research 49 (22), 12622-12633, 2021	18	2021
RNA and DNA G-quadruplexes bind to human dicer and inhibit its activity N Koralewska, A Szczepanska, K Ciechanowska, M Wojnicka, ... Cellular and Molecular Life Sciences 78 (7), 3709-3724, 2021	15	2021
A structure-based model for the prediction of protein-RNA binding affinity C Nithin, S Mukherjee, RP Bahadur RNA, doi:10.1261/rna.071779.119, 2019	13	2019
Dissecting water binding sites at protein–protein interfaces: a lesson from the atomic structures in the Protein Data Bank S Mukherjee, C Nithin, Y Divakaruni, RP Bahadur Journal of Biomolecular Structure and Dynamics 37 (5), 1204-1219, 2019	10	2019
Comparative analysis of RNA 3D structure prediction methods: towards enhanced modeling of RNA–ligand interactions C Nithin, S Kmiecik, R Błaszczyk, J Nowicka, I Tuszyńska Nucleic Acids Research, 2024	6	2024

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