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San Emmanuel James
San Emmanuel James
Andre navnJames Emmanuel San, Emmanuel James San
Bioinformatician II, Duke Human Vaccine Institute
Verifisert e-postadresse på ukzn.ac.za
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Detection of a SARS-CoV-2 variant of concern in South Africa
H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ...
Nature 592 (7854), 438-443, 2021
16502021
Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ...
Nature 603 (7902), 679-686, 2022
16462022
Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa
H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ...
medrxiv, 2020.12. 21.20248640, 2020
12402020
Omicron extensively but incompletely escapes Pfizer BNT162b2 neutralization
S Cele, L Jackson, DS Khoury, K Khan, T Moyo-Gwete, H Tegally, JE San, ...
Nature 602 (7898), 654-656, 2022
11272022
Emergence of SARS-CoV-2 omicron lineages BA. 4 and BA. 5 in South Africa
H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ...
Nature medicine 28 (9), 1785-1790, 2022
6322022
Sixteen novel lineages of SARS-CoV-2 in South Africa
H Tegally, E Wilkinson, RJ Lessells, J Giandhari, S Pillay, N Msomi, ...
Nature medicine 27 (3), 440-446, 2021
3802021
SARS-CoV-2 Omicron has extensive but incomplete escape of Pfizer BNT162b2 elicited neutralization and requires ACE2 for infection
S Cele, L Jackson, DS Khoury, K Khan, T Moyo-Gwete, H Tegally, JE San, ...
MedRxiv, 2021
3712021
The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages
DP Martin, S Weaver, H Tegally, JE San, SD Shank, E Wilkinson, ...
Cell 184 (20), 5189-5200. e7, 2021
2762021
Emergence of a SARS-CoV-2 variant of concern with mutations in spike glycoprotein
H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ...
Nature 592 (7854), 438-443, 2021
2282021
A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa
E Wilkinson, M Giovanetti, H Tegally, JE San, R Lessells, D Cuadros, ...
Science 374 (6566), 423-431, 2021
2172021
SARS-CoV-2 prolonged infection during advanced HIV disease evolves extensive immune escape
S Cele, F Karim, G Lustig, JE San, T Hermanus, H Tegally, J Snyman, ...
Cell host & microbe 30 (2), 154-162. e5, 2022
2082022
Omicron BA. 4/BA. 5 escape neutralizing immunity elicited by BA. 1 infection
K Khan, F Karim, Y Ganga, M Bernstein, Z Jule, K Reedoy, S Cele, ...
Nature communications 13 (1), 4686, 2022
1632022
The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance
H Tegally, JE San, M Cotten, M Moir, B Tegomoh, G Mboowa, DP Martin, ...
Science 378 (6615), eabq5358, 2022
1232022
Next generation sequencing and bioinformatics analysis of family genetic inheritance
AM Kanzi, JE San, B Chimukangara, E Wilkinson, M Fish, V Ramsuran, ...
Frontiers in Genetics 11, 544162, 2020
1222020
Continued emergence and evolution of Omicron in South Africa: New BA. 4 and BA. 5 lineages
H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ...
MedRxiv, 2022.05. 01.22274406, 2022
1152022
Persistent SARS-CoV-2 infection and intra-host evolution in association with advanced HIV infection
F Karim, MYS Moosa, BI Gosnell, S Cele, J Giandhari, S Pillay, H Tegally, ...
MedRxiv, 2021.06. 03.21258228, 2021
1052021
Kosakovsky Pond SL, Weaver S., Martin D., Lessells RJ, Bhiman JN, Williamson C., de Oliveira T
H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ...
Detection of a SARS-CoV-2 variant of concern in South Africa. Nature 592 …, 2021
1022021
HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens
W Fischer, EE Giorgi, S Chakraborty, K Nguyen, T Bhattacharya, J Theiler, ...
Cell host & microbe 29 (7), 1093-1110, 2021
1012021
Whole genome sequencing of SARS-CoV-2: adapting Illumina protocols for quick and accurate outbreak investigation during a pandemic
S Pillay, J Giandhari, H Tegally, E Wilkinson, B Chimukangara, R Lessells, ...
Genes 11 (8), 949, 2020
992020
A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes
V Fonseca, PJK Libin, K Theys, NR Faria, MRT Nunes, MI Restovic, ...
PLoS neglected tropical diseases 13 (5), e0007231, 2019
952019
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Artikler 1–20