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Lim Heo
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ColabFold-Making protein folding accessible to all
M Mirdita, K Schuetze, Y Moriwaki, L Heo, S Ovchinnikov, M Steinegger
Nature Methods 19, 679-682, 2022
65312022
GalaxyRefine: Protein structure refinement driven by side-chain repacking
L Heo, H Park, C Seok
Nucleic acids research 41 (W1), W384-W388, 2013
11142013
GalaxyWEB server for protein structure prediction and refinement
J Ko, H Park, L Heo, C Seok
Nucleic acids research 40 (W1), W294-W297, 2012
8562012
GalaxyPepDock: a protein–peptide docking tool based on interaction similarity and energy optimization
H Lee, L Heo, MS Lee, C Seok
Nucleic acids research 43 (W1), W431-W435, 2015
2902015
Prediction of protein structure and interaction by GALAXY protein modeling programs
WH Shin, GR Lee, L Heo, H Lee, C Seok
Biodesign 2, 1-11, 2014
2132014
Advances in GPCR modeling evaluated by the GPCR Dock 2013 assessment: meeting new challenges
I Kufareva, V Katritch, RC Stevens, R Abagyan
Structure 22 (8), 1120-1139, 2014
1912014
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
1682016
Multi-state Modeling of G-protein Coupled Receptors at Experimental Accuracy
L Heo, M Feig
Proteins: Structure, Function, and Bioinformatics 90, 1873–1885, 2022
1442022
GalaxyHomomer: a web server for protein homo-oligomer structure prediction from a monomer sequence or structure
M Baek, T Park, L Heo, C Park, C Seok
Nucleic acids research 45 (W1), W320-W324, 2017
1362017
Effective protein model structure refinement by loop modeling and overall relaxation
GR Lee, L Heo, C Seok
Proteins: Structure, Function, and Bioinformatics 84, 293-301, 2016
1292016
GalaxyRefineComplex: Refinement of protein-protein complex model structures driven by interface repacking
L Heo, H Lee, C Seok
Scientific reports 6 (1), 32153, 2016
1262016
GalaxySite: ligand-binding-site prediction by using molecular docking
L Heo, WH Shin, MS Lee, C Seok
Nucleic acids research 42 (W1), W210-W214, 2014
1122014
GalaxyRefine2: simultaneous refinement of inaccurate local regions and overall protein structure
GR Lee, J Won, L Heo, C Seok
Nucleic acids research 47 (W1), W451-W455, 2019
1112019
Direct Generation of Protein Conformational Ensembles via Machine Learning
G Janson, G Valdes-Garcia, L Heo, M Feig
Nature Communications 14, 774, 2023
1082023
The challenge of modeling protein assemblies: the CASP12‐CAPRI experiment
MF Lensink, S Velankar, M Baek, L Heo, C Seok, SJ Wodak
Proteins: Structure, Function, and Bioinformatics 86, 257-273, 2018
1052018
Protein loop modeling using a new hybrid energy function and its application to modeling in inaccurate structural environments
H Park, GR Lee, L Heo, C Seok
PloS one 9 (11), e113811, 2014
1002014
Experimental accuracy in protein structure refinement via molecular dynamics simulations
L Heo, M Feig
Proceedings of the National Academy of Sciences 115 (52), 13276-13281, 2018
892018
Modeling of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) proteins by machine learning and physics-based refinement
L Heo, M Feig
BioRxiv, 2020
742020
High‐accuracy protein structures by combining machine‐learning with physics‐based refinement
L Heo, M Feig
Proteins: Structure, Function, and Bioinformatics 88 (5), 637-642, 2020
642020
LigDockCSA: protein–ligand docking using conformational space annealing
WH Shin, L Heo, J Lee, J Ko, C Seok, J Lee
Journal of computational chemistry 32 (15), 3226-3232, 2011
602011
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Artikler 1–20