| DGIdb 3.0: a redesign and expansion of the drug–gene interaction database KC Cotto, AH Wagner, YY Feng, S Kiwala, AC Coffman, G Spies, ... Nucleic acids research 46 (D1), D1068-D1073, 2018 | 842 | 2018 |
| CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer M Griffith, NC Spies, K Krysiak, JF McMichael, AC Coffman, AM Danos, ... Nature genetics 49 (2), 170-174, 2017 | 602 | 2017 |
| DGIdb: mining the druggable genome M Griffith, OL Griffith, AC Coffman, JV Weible, JF McMichael, NC Spies, ... Nature methods 10 (12), 1209-1210, 2013 | 539 | 2013 |
| DGIdb 2.0: mining clinically relevant drug–gene interactions AH Wagner, AC Coffman, BJ Ainscough, NC Spies, ZL Skidmore, ... Nucleic acids research 44 (D1), D1036-D1044, 2016 | 410 | 2016 |
| NeoPalAna: neoadjuvant palbociclib, a cyclin-dependent kinase 4/6 inhibitor, and anastrozole for clinical stage 2 or 3 estrogen receptor–positive breast cancer CX Ma, F Gao, J Luo, DW Northfelt, M Goetz, A Forero, J Hoog, ... Clinical Cancer Research 23 (15), 4055-4065, 2017 | 345 | 2017 |
| Neoadjuvant and adjuvant pembrolizumab in resectable locally advanced, human papillomavirus–unrelated head and neck cancer: a multicenter, phase II trial R Uppaluri, KM Campbell, AM Egloff, P Zolkind, ZL Skidmore, ... Clinical Cancer Research 26 (19), 5140-5152, 2020 | 283 | 2020 |
| Informatics for RNA sequencing: a web resource for analysis on the cloud M Griffith, JR Walker, NC Spies, BJ Ainscough, OL Griffith PLoS computational biology 11 (8), e1004393, 2015 | 162 | 2015 |
| Recurrent WNT pathway alterations are frequent in relapsed small cell lung cancer AH Wagner, S Devarakonda, ZL Skidmore, K Krysiak, A Ramu, L Trani, ... Nature communications 9 (1), 3787, 2018 | 143 | 2018 |
| The prognostic effects of somatic mutations in ER-positive breast cancer OL Griffith, NC Spies, M Anurag, M Griffith, J Luo, D Tu, B Yeo, J Kunisaki, ... Nature communications 9 (1), 3476, 2018 | 141 | 2018 |
| A phase I trial of BKM120 (Buparlisib) in combination with fulvestrant in postmenopausal women with estrogen receptor–positive metastatic breast cancer CX Ma, J Luo, M Naughton, F Ademuyiwa, R Suresh, M Griffith, OL Griffith, ... Clinical cancer research 22 (7), 1583-1591, 2016 | 101 | 2016 |
| Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples EK Barnell, P Ronning, KM Campbell, K Krysiak, BJ Ainscough, LM Sheta, ... Genetics in Medicine 21 (4), 972-981, 2019 | 92 | 2019 |
| Comprehensive genomic analysis reveals FLT3 activation and a therapeutic strategy for a patient with relapsed adult B-lymphoblastic leukemia M Griffith, OL Griffith, K Krysiak, ZL Skidmore, MJ Christopher, JM Klco, ... Experimental hematology 44 (7), 603-613, 2016 | 56 | 2016 |
| Retrotransposons Are the Major Contributors to the Expansion of the Drosophila ananassae Muller F Element W Leung, CD Shaffer, EJ Chen, TJ Quisenberry, K Ko, JM Braverman, ... G3: Genes, Genomes, Genetics 7 (8), 2439-2460, 2017 | 27 | 2017 |
| Organizational preparedness for the use of large language models in pathology informatics SN Hart, NG Hoffman, P Gershkovich, C Christenson, DS McClintock, ... Journal of Pathology Informatics 14, 100338, 2023 | 24 | 2023 |
| Machine-learning algorithm incorporating capacitated sperm intracellular pH predicts conventional in vitro fertilization success in normospermic patients SJ Gunderson, LCP Molina, N Spies, PA Balestrini, MG Buffone, ... Fertility and sterility 115 (4), 930-939, 2021 | 24 | 2021 |
| Genetic characterization of primary and metastatic high-grade serous ovarian cancer tumors reveals distinct features associated with survival EN Kotnik, MM Mullen, NC Spies, T Li, M Inkman, J Zhang, ... Communications biology 6 (1), 688, 2023 | 20 | 2023 |
| CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase K Krysiak, AM Danos, J Saliba, JF McMichael, AC Coffman, S Kiwala, ... Nucleic acids research 51 (D1), D1230-D1241, 2023 | 19 | 2023 |
| Standard operating procedure for curation and clinical interpretation of variants in cancer AM Danos, K Krysiak, EK Barnell, AC Coffman, JF McMichael, S Kiwala, ... Genome medicine 11, 1-12, 2019 | 18 | 2019 |
| Distinct clonal identities of B-ALLs arising after lenolidomide therapy for multiple myeloma EK Barnell, ZL Skidmore, KF Newcomer, M Chavez, KM Campbell, ... Blood Advances 7 (2), 236-245, 2023 | 12 | 2023 |
| Automating the detection of IV fluid contamination using unsupervised machine learning NC Spies, Z Hubler, V Azimi, R Zhang, R Jackups Jr, AM Gronowski, ... Clinical chemistry 70 (2), 444-452, 2024 | 10 | 2024 |
