Xiaojie Qiu

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Cole TrapnellAssociate Professor, Dept. of Genome Sciences, University of WashingtonVerifisert e-postadresse på uw.edu
Jay ShendureProfessor of Genome Sciences, University of WashingtonVerifisert e-postadresse på uw.edu
Li WangUniversity of Texas at ArlingtonVerifisert e-postadresse på uta.edu
Jonathan S. PackerForesite LabsVerifisert e-postadresse på foresitelabs.com
Hannah A PlinerUniversity of WashingtonVerifisert e-postadresse på uw.edu
Junyue CaoThe Rockefeller UniversityVerifisert e-postadresse på rockefeller.edu
Andrew J HillTune TherapeuticsVerifisert e-postadresse på u.washington.edu
Darren CusanovichUniversity of ArizonaVerifisert e-postadresse på email.arizona.edu
José L. McFaline-FigueroaAssistant Professor of Biomedical Engineering, Columbia UniversityVerifisert e-postadresse på columbia.edu
Yi-An MaUC San DiegoVerifisert e-postadresse på ucsd.edu
Andrew C AdeyProfessor of Molecular & Medical Genetics, Oregon Health & Science UniversityVerifisert e-postadresse på ohsu.edu
Jonathan S. WeissmanUCSF/HHMIVerifisert e-postadresse på ucsf.edu
Malte SpielmannInstitute of Human Genetics, University of Lübeck & Kiel UniversityVerifisert e-postadresse på uw.edu
Joseph ReplogleMD PhD, PGY1 @ MGH/Harvard Medical SchoolVerifisert e-postadresse på wi.mit.edu
Sanjay SrivatsanAssistant Professor Fred Hutch Cancer CenterVerifisert e-postadresse på fredhutch.org
Ying TangProfessor, University of Electronic Science and Technology of ChinaVerifisert e-postadresse på uestc.edu.cn
Raghav ChawlaUniversity of Washington, Seattle Children's Hospital, Fred Hutchinson Cancer Research CenterVerifisert e-postadresse på uw.edu
Kyung Hoi (Joseph) MinSoftware Engineer, Ginkgo BioworksVerifisert e-postadresse på alum.mit.edu
Delasa AghamirzaieSenior Bioinformatics Scientist at illuminaVerifisert e-postadresse på vt.edu
Vijay RamaniAssistant Professor, Gladstone Institutes / UCSFVerifisert e-postadresse på ucsf.edu

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Xiaojie Qiu

Assistant Professor, BASE, Department of Genetics & Computer Science, Stanford

Verifisert e-postadresse på stanford.edu - Startside

Predictive genomics Single cell genomics spatial genomics developmental biology systems biology


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Reversed graph embedding resolves complex single-cell trajectories X Qiu, Q Mao, Y Tang, L Wang, R Chawla, HA Pliner, C Trapnell Nature methods 14 (10), 979-982, 2017	3638	2017
The single-cell transcriptional landscape of mammalian organogenesis J Cao, M Spielmann, X Qiu, X Huang, DM Ibrahim, AJ Hill, F Zhang, ... Nature 566 (7745), 496-502, 2019	3225	2019
Single-cell mRNA quantification and differential analysis with Census X Qiu, A Hill, J Packer, D Lin, YA Ma, C Trapnell Nature methods 14 (3), 309-315, 2017	1527	2017
Comprehensive single-cell transcriptional profiling of a multicellular organism J Cao, JS Packer, V Ramani, DA Cusanovich, C Huynh, R Daza, X Qiu, ... Science 357 (6352), 661-667, 2017	1455	2017
Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays A Chen, S Liao, M Cheng, K Ma, L Wu, Y Lai, X Qiu, J Yang, J Xu, S Hao, ... Cell 185 (10), 1777-1792. e21, 2022	958	2022
Cicero predicts cis-regulatory DNA interactions from single-cell chromatin accessibility data HA Pliner, JS Packer, JL McFaline-Figueroa, DA Cusanovich, RM Daza, ... Molecular cell 71 (5), 858-871. e8, 2018	722	2018
The cis-regulatory dynamics of embryonic development at single-cell resolution DA Cusanovich, JP Reddington, DA Garfield, RM Daza, D Aghamirzaie, ... Nature 555 (7697), 538-542, 2018	358	2018
Mapping transcriptomic vector fields of single cells X Qiu, Y Zhang, JD Martin-Rufino, C Weng, S Hosseinzadeh, D Yang, ... Cell 185 (4), 690-711. e45, 2022	341	2022
Single-cell transcriptomics reveals receptor transformations during olfactory neurogenesis NK Hanchate, K Kondoh, Z Lu, D Kuang, X Ye, X Qiu, L Pachter, ... Science 350 (6265), 1251-1255, 2015	238	2015
Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution D Yang, MG Jones, S Naranjo, WM Rideout, KHJ Min, R Ho, W Wu, ... Cell 185 (11), 1905-1923. e25, 2022	223	2022
Inferring causal gene regulatory networks from coupled single-cell expression dynamics using scribe X Qiu, A Rahimzamani, L Wang, B Ren, Q Mao, T Durham, ... Cell systems 10 (3), 265-274. e11, 2020	182*	2020
Single-cell Stereo-seq reveals induced progenitor cells involved in axolotl brain regeneration X Wei, S Fu, H Li, Y Liu, S Wang, W Feng, Y Yang, X Liu, YY Zeng, ... Science 377 (6610), eabp9444, 2022	178	2022
A pooled single-cell genetic screen identifies regulatory checkpoints in the continuum of the epithelial-to-mesenchymal transition JL McFaline-Figueroa, AJ Hill, X Qiu, D Jackson, J Shendure, C Trapnell Nature genetics 51 (9), 1389-1398, 2019	168	2019
Massively parallel and time-resolved RNA sequencing in single cells with scNT-seq Q Qiu, P Hu, X Qiu, KW Govek, PG Cámara, H Wu Nature methods 17 (10), 991-1001, 2020	151	2020
Thyroid hormone regulates distinct paths to maturation in pigment cell lineages LM Saunders, AK Mishra, AJ Aman, VM Lewis, MB Toomey, JS Packer, ... Elife 8, e45181, 2019	127	2019
Aligning single-cell developmental and reprogramming trajectories identifies molecular determinants of myogenic reprogramming outcome D Cacchiarelli, X Qiu, S Srivatsan, A Manfredi, M Ziller, E Overbey, ... Cell Systems 7 (3), 258-268. e3, 2018	84	2018
Massively parallel base editing to map variant effects in human hematopoiesis JD Martin-Rufino, N Castano, M Pang, EI Grody, S Joubran, A Caulier, ... Cell 186 (11), 2456-2474. e24, 2023	74	2023
Deciphering cell states and genealogies of human haematopoiesis C Weng, F Yu, D Yang, M Poeschla, LA Liggett, MG Jones, X Qiu, ... Nature 627 (8003), 389-398, 2024	58	2024
Spatiotemporally resolved transcriptomics reveals the subcellular RNA kinetic landscape J Ren, H Zhou, H Zeng, CK Wang, J Huang, X Qiu, X Sui, Q Li, X Wu, ... Nature Methods 20 (5), 695-705, 2023	36	2023
From understanding the development landscape of the canonical fate-switch pair to constructing a dynamic landscape for two-step neural differentiation X Qiu, S Ding, T Shi PloS one 7 (12), e49271, 2012	36	2012

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