| Somatic mosaic IDH1 and IDH2 mutations are associated with enchondroma and spindle cell hemangioma in Ollier disease and Maffucci syndrome TC Pansuriya, R van Eijk, P d'Adamo, MAJH van Ruler, ML Kuijjer, ... Nature genetics 43 (12), 1256-1261, 2011 | 599 | 2011 |
| Tumor-infiltrating macrophages are associated with metastasis suppression in high-grade osteosarcoma: a rationale for treatment with macrophage activating agents EP Buddingh, ML Kuijjer, RAJ Duim, H Bürger, K Agelopoulos, ... Clinical Cancer Research 17 (8), 2110-2119, 2011 | 486 | 2011 |
| Genome-Wide Association Study in Asian Populations Identifies Variants in ETS1 and WDFY4 Associated with Systemic Lupus Erythematosus W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ... PLoS genetics 6 (2), e1000841, 2010 | 467 | 2010 |
| Understanding tissue-specific gene regulation AR Sonawane, J Platig, M Fagny, CY Chen, JN Paulson, ... Cell reports 21 (4), 1077-1088, 2017 | 431 | 2017 |
| Sex differences in gene expression and regulatory networks across 29 human tissues CM Lopes-Ramos, CY Chen, ML Kuijjer, JN Paulson, AR Sonawane, ... Cell reports 31 (12), 2020 | 316 | 2020 |
| Modulation of the osteosarcoma expression phenotype by microRNAs HM Namløs, LA Meza-Zepeda, T Barøy, IHG Østensen, SH Kresse, ... PloS one 7 (10), e48086, 2012 | 297 | 2012 |
| Estimating sample-specific regulatory networks ML Kuijjer, MG Tung, GC Yuan, J Quackenbush, K Glass Iscience 14, 226-240, 2019 | 162 | 2019 |
| Identification of osteosarcoma driver genes by integrative analysis of copy number and gene expression data ML Kuijjer, H Rydbeck, SH Kresse, EP Buddingh, AB Lid, H Roelofs, ... Genes, Chromosomes and Cancer 51 (7), 696-706, 2012 | 153 | 2012 |
| Cross-species genomic landscape comparison of human mucosal melanoma with canine oral and equine melanoma K Wong, L van der Weyden, CR Schott, A Foote, F Constantino-Casas, ... Nature communications 10 (1), 353, 2019 | 132 | 2019 |
| Tumor‐infiltrating CD14‐positive myeloid cells and CD8‐positive T‐cells prolong survival in patients with cervical carcinoma PJ De Vos van Steenwijk, TH Ramwadhdoebe, R Goedemans, ... International journal of cancer 133 (12), 2884-2894, 2013 | 122 | 2013 |
| Gene regulatory network analysis identifies sex-linked differences in colon cancer drug metabolism CM Lopes-Ramos, ML Kuijjer, S Ogino, CS Fuchs, DL DeMeo, K Glass, ... Cancer research 78 (19), 5538-5547, 2018 | 118 | 2018 |
| IR/IGF1R signaling as potential target for treatment of high-grade osteosarcoma ML Kuijjer, EFP Peterse, BEWM van den Akker, IH Briaire-de Bruijn, ... BMC cancer 13, 1-9, 2013 | 118 | 2013 |
| Macrophages inhibit human osteosarcoma cell growth after activation with the bacterial cell wall derivative liposomal muramyl tripeptide in combination with interferon-γ JHW Pahl, KMC Kwappenberg, EM Varypataki, SJ Santos, ML Kuijjer, ... Journal of Experimental & Clinical Cancer Research 33, 1-13, 2014 | 113 | 2014 |
| Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas DGP van IJzendoorn, K Szuhai, IH Briaire-de Bruijn, M Kostine, ML Kuijjer, ... PLoS computational biology 15 (2), e1006826, 2019 | 107 | 2019 |
| Exploring regulation in tissues with eQTL networks M Fagny, JN Paulson, ML Kuijjer, AR Sonawane, CY Chen, ... Proceedings of the National Academy of Sciences 114 (37), E7841-E7850, 2017 | 101 | 2017 |
| Genome‐wide analyses on high‐grade osteosarcoma: Making sense of a genomically most unstable tumor ML Kuijjer, PCW Hogendoorn, AM Cleton‐Jansen International journal of cancer 133 (11), 2512-2521, 2013 | 89 | 2013 |
| Cancer subtype identification using somatic mutation data ML Kuijjer, JN Paulson, P Salzman, W Ding, J Quackenbush British journal of cancer 118 (11), 1492-1501, 2018 | 83 | 2018 |
| Immune response to RB1-regulated senescence limits radiation-induced osteosarcoma formation M Kansara, H San Leong, DM Lin, S Popkiss, P Pang, DW Garsed, ... The Journal of clinical investigation 123 (12), 5351-5360, 2013 | 83 | 2013 |
| Alternate splicing of the p53 inhibitor HDMX offers a superior prognostic biomarker than p53 mutation in human cancer K Lenos, AM Grawenda, K Lodder, ML Kuijjer, AFAS Teunisse, E Repapi, ... Cancer research 72 (16), 4074-4084, 2012 | 80 | 2012 |
| The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires M Pavlović, L Scheffer, K Motwani, C Kanduri, R Kompova, N Vazov, ... Nature Machine Intelligence 3 (11), 936-944, 2021 | 75 | 2021 |
John QuackenbushHarvard T.H. Chan School of Public Health, Channing Division of Network Medicine, and Dana-FarberVerifisert e-postadresse på hsph.harvard.edu