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Josh D. Neufeld
Josh D. Neufeld
Department of Biology, University of Waterloo
Verifisert e-postadresse på uwaterloo.ca - Startside
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A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
25282017
PANDAseq: paired-end assembler for Illumina sequences
AP Masella, AK Bartram, JM Truszkowski, DG Brown, JD Neufeld
BMC Bioinformatics 13 (1), 31, 2012
23082012
Ecology and exploration of the rare biosphere
MDJ Lynch, JD Neufeld
Nature Reviews Microbiology 13 (4), 217-229, 2015
11492015
Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end Illumina reads
AK Bartram, MDJ Lynch, JC Stearns, G Moreno-Hagelsieb, JD Neufeld
Applied and Environmental Microbiology 77 (11), 3846-3852, 2011
10012011
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ...
Nature Biotechnology 29 (5), 415-420, 2011
7602011
Transplantation of fecal microbiota from patients with irritable bowel syndrome alters gut function and behavior in recipient mice
G De Palma, MDJ Lynch, J Lu, VT Dang, Y Deng, J Jury, G Umeh, ...
Science Translational Medicine 9 (379), eaaf6397, 2017
5652017
DNA stable-isotope probing
JD Neufeld, J Vohra, MG Dumont, T Lueders, M Manefield, MW Friedrich, ...
Nature Protocols 2 (4), 860-866, 2007
5582007
Bacterial biogeography of the human digestive tract
JC Stearns, MDJ Lynch, DB Senadheera, HC Tenenbaum, MB Goldberg, ...
Scientific Reports 1, 170, 2011
4772011
Evaluating bias of Illumina-based bacterial 16S rRNA gene profiles
K Kennedy, MW Hall, MDJ Lynch, G Moreno-Hagelsieb, JD Neufeld
Applied and Environmental Microbiology, 2014
2922014
Who eats what, where and when? Isotope-labelling experiments are coming of age
JD Neufeld, M Wagner, JC Murrell
The ISME Journal 1 (2), 103-110, 2007
2902007
Methodological considerations for the use of stable isotope probing in microbial ecology
JD Neufeld, MG Dumont, J Vohra, JC Murrell
Microbial Ecology 53 (3), 435-442, 2007
2812007
Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology
EK Binga, RS Lasken, JD Neufeld
The ISME Journal 2 (3), 233-241, 2008
2392008
Comprehensive skin microbiome analysis reveals the uniqueness of human skin and evidence for phylosymbiosis within the class Mammalia
AA Ross, KM Müller, JS Weese, JD Neufeld
Proceedings of the National Academy of Sciences USA 115 (25), E5786-E5795, 2018
2382018
Biogeography of anaerobic ammonia-oxidizing (anammox) bacteria
P Sonthiphand, MW Hall, JD Neufeld
Frontiers in Microbiology 5, 399, 2014
2122014
Cultivation and characterization of Candidatus Nitrosocosmicus exaquare, an ammonia-oxidizing archaeon from a municipal wastewater treatment system
LA Sauder, M Albertsen, K Engel, J Schwarz, PH Nielsen, M Wagner, ...
The ISME Journal 11 (5), 1142, 2017
2102017
Stable-isotope probing implicates Methylophaga spp and novel Gammaproteobacteria in marine methanol and methylamine metabolism
JD Neufeld, H Schäfer, MJ Cox, R Boden, IR McDonald, JC Murrell
The ISME Journal 1 (6), 480-491, 2007
2102007
Inter-personal diversity and temporal dynamics of dental, tongue, and salivary microbiota in the healthy oral cavity
MW Hall, N Singh, KF Ng, DK Lam, MB Goldberg, HC Tenenbaum, ...
NPJ Biofilms and Microbiomes 3 (1), 2, 2017
2092017
The skin microbiome of vertebrates
AA Ross, A Rodrigues Hoffmann, JD Neufeld
Microbiome 7 (1), 79, 2019
2082019
Denaturing gradient gel electrophoresis (DGGE) for microbial community analysis
SJ Green, MB Leigh, JD Neufeld
Hydrocarbon and Lipid Microbiology Protocols: Microbial Quantitation …, 2017
2062017
Current and future resources for functional metagenomics
KN Lam, J Cheng, K Engel, JD Neufeld, TC Charles
Frontiers in Microbiology 6, 1196, 2015
1992015
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Artikler 1–20