| PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex A Lamiable, P Thévenet, J Rey, M Vavrusa, P Derreumaux, P Tufféry Nucleic acids research 44 (W1), W449-W454, 2016 | 978 | 2016 |
| MTiOpenScreen: a web server for structure-based virtual screening CM Labbé, J Rey, D Lagorce, M Vavruša, J Becot, O Sperandio, ... Nucleic acids research 43 (W1), W448-W454, 2015 | 242 | 2015 |
| The pepATTRACT web server for blind, large-scale peptide–protein docking SJ de Vries, J Rey, CEM Schindler, M Zacharias, P Tuffery Nucleic Acids Research 45 (W1), W361-W364, 2017 | 107 | 2017 |
| PEP-SiteFinder: a tool for the blind identification of peptide binding sites on protein surfaces A Saladin, J Rey, P Thévenet, M Zacharias, G Moroy, P Tufféry Nucleic acids research 42 (W1), W221-W226, 2014 | 89 | 2014 |
| InterEvDock: a docking server to predict the structure of protein–protein interactions using evolutionary information J Yu, M Vavrusa, J Andreani, J Rey, P Tufféry, R Guerois Nucleic acids research 44 (W1), W542-W549, 2016 | 79 | 2016 |
| SeamDock: an interactive and collaborative online docking resource to assist small compound molecular docking S Murail, SJ De Vries, J Rey, G Moroy, P Tufféry Frontiers in molecular biosciences 8, 716466, 2021 | 62 | 2021 |
| InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs C Quignot, J Rey, J Yu, P Tufféry, R Guerois, J Andreani Nucleic acids research 46 (W1), W408-W416, 2018 | 61 | 2018 |
| PEP-FOLD4: A pH-dependent force field for peptide structure prediction in aqueous solution J Rey, S Murail, S de Vries, P Derreumaux, P Tuffery Nucleic acids research 51 (W1), W432-W437, 2023 | 49 | 2023 |
| DaReUS-Loop: a web server to model multiple loops in homology models Y Karami, J Rey, G Postic, S Murail, P Tufféry, SJ De Vries Nucleic Acids Research 47 (W1), W423-W428, 2019 | 40 | 2019 |
| An indel in transmembrane helix 2 helps to trace the molecular evolution of class A G-protein-coupled receptors J Devillé, J Rey, M Chabbert Journal of molecular evolution 68 (5), 475-489, 2009 | 35 | 2009 |
| Online structure-based screening of purchasable approved drugs and natural compounds: retrospective examples of drug repositioning on cancer targets N Lagarde, J Rey, A Gyulkhandanyan, P Tufféry, MA Miteva, ... Oncotarget 9 (64), 32346, 2018 | 32 | 2018 |
| Comprehensive analysis of the helix‐X‐helix motif in soluble proteins J Deville, J Rey, M Chabbert Proteins: Structure, Function, and Bioinformatics 72 (1), 115-135, 2008 | 26 | 2008 |
| BactPepDB: a database of predicted peptides from a exhaustive survey of complete prokaryote genomes J Rey, P Deschavanne, P Tuffery Database 2014, 2014 | 25 | 2014 |
| InterEvDock3: a combined template-based and free docking server with increased performance through explicit modeling of complex homologs and integration of covariation-based … C Quignot, G Postic, H Bret, J Rey, P Granger, S Murail, P Chacon, ... Nucleic Acids Research 49 (W1), W277-W284, 2021 | 23 | 2021 |
| A free web-based protocol to assist structure-based virtual screening experiments N Lagarde, E Goldwaser, T Pencheva, D Jereva, I Pajeva, J Rey, ... International Journal of Molecular Sciences 20 (18), 4648, 2019 | 23 | 2019 |
| Structural determinants stabilizing helical distortions related to proline J Rey, J Deville, M Chabbert Journal of structural biology 171 (3), 266-276, 2010 | 21 | 2010 |
| PatchSearch: a web server for off-target protein identification J Rey, I Rasolohery, P Tufféry, F Guyon, G Moroy Nucleic Acids Research 47 (W1), W365-W372, 2019 | 18 | 2019 |
| The CH1α domain of mucosal gp41 IgA contributes to antibody specificity and antiviral functions in HIV-1 highly exposed Sero-Negative individuals M Khamassi, L Xu, J Rey, M Duchemin, T Bouceba, P Tuffery, D Tudor, ... PLoS Pathogens 16 (12), e1009103, 2020 | 16 | 2020 |
| De novo peptide structure prediction: an overview P Thévenet, J Rey, G Moroy, P Tuffery Computational Peptidology, 1-13, 2015 | 11 | 2015 |
| BCSearch: fast structural fragment mining over large collections of protein structures F Guyon, F Martz, M Vavrusa, J Bécot, J Rey, P Tufféry Nucleic Acids Research 43 (W1), W378-W382, 2015 | 8 | 2015 |