| MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020 | 419 | 2020 |
| Metabolic modelling approaches for describing and engineering microbial communities B García-Jiménez, J Torres-Bacete, J Nogales Computational and Structural Biotechnology Journal 19, 226, 2020 | 75 | 2020 |
| FLYCOP: metabolic modeling-based analysis and engineering microbial communities B García-Jiménez, JL García, J Nogales Bioinformatics 34 (17), i954–i963, 2018 | 68 | 2018 |
| Memote: A community driven effort towards a standardized genome-scale metabolic model test suite C Lieven, ME Beber, BG Olivier, FT Bergmann, P Babaei, JA Bartell, ... BioRxiv, 350991, 2018 | 59 | 2018 |
| EcID. A database for the inference of functional interactions in E. coli EA Leon, I Ezkurdia, B García, A Valencia, D Juan Nucleic acids research 37 (suppl 1), D629-D635, 2009 | 38 | 2009 |
| Enhancing Microbiome Research through Genome-Scale Metabolic Modeling NYD Ankrah, DB Bernstein, M Biggs, M Carey, M Engevik, ... Msystems 6 (6), e00599-21, 2021 | 28* | 2021 |
| Predicting microbiomes through a deep latent space B García-Jiménez, J Muñoz, S Cabello, J Medina, MD Wilkinson Bioinformatics, doi.org/10.1093/bioinformatics/btaa971, 2020 | 27 | 2020 |
| MDPbiome: microbiome engineering through prescriptive perturbations B García-Jiménez, T de la Rosa, MD Wilkinson Bioinformatics 34 (17), i838-i847, 2018 | 20 | 2018 |
| Robust and automatic definition of microbiome states B García-Jiménez, MD Wilkinson PeerJ 7, e6657, 2019 | 16 | 2019 |
| Inference of functional relations in predicted protein networks with a machine learning approach B García-Jiménez, D Juan, I Ezkurdia, E Andrés-León, A Valencia PloS one 5 (4), e9969, 2010 | 16 | 2010 |
| Data-driven classification of the certainty of scholarly assertions M Prieto, H Deus, A De Waard, E Schultes, B García-Jiménez, ... PeerJ 8, e8871, 2020 | 15 | 2020 |
| Local network properties of soil and rhizosphere microbial communities in potato plantations treated with a biological product are important predictors of crop yield N Imam, I Belda, B García-Jiménez, AJ Duehl, JR Doroghazi, ... Msphere 6 (4), 10.1128/msphere. 00130-21, 2021 | 11 | 2021 |
| Testing the stress gradient hypothesis in soil bacterial communities associated with vegetation belts in the Andean Atacama Desert D Mandakovic, C Aguado-Norese, B García-Jiménez, C Hodar, ... Environmental Microbiome 18 (1), 24, 2023 | 10 | 2023 |
| Lettuce Soil Microbiome Modulated by an L-α-Amino Acid-Based Biostimulant M Acin-Albiac, B García-Jiménez, C Marín Garrido, E Borda Casas, ... Agriculture 13 (2), 344, 2023 | 7 | 2023 |
| Protein-protein functional association prediction using genetic programming B García-Jiménez, R Aler, A Ledezma, A Sanchis Proceedings of the 10th annual conference on Genetic and Evolutionary …, 2008 | 6* | 2008 |
| Automatic annotation of bioinformatics workflows with biomedical ontologies B García-Jiménez, MD Wilkinson 6th International Symposium on Leveraging Applications, ISoLA 2014, 2014 | 5 | 2014 |
| Dynamic simulations of microbial communities under perturbations: opportunities for microbiome engineering B García-Jiménez, J Carrasco, J Medina, MD Wilkinson ResearchSquare, 2020 | 4 | 2020 |
| Predicting Protein Relationships to Human Pathways through a Relational Learning Approach based on Simple Sequence Features B Garcia-Jimenez, T Pons, A Sanchis, A Valencia IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2014 | 4 | 2014 |
| Genetic programming for predicting protein networks B García-Jiménez, R Aler, A Ledezma, A Sanchis Proceedings of the 11th Ibero-American Conference on Artificial Intelligence …, 2008 | 4* | 2008 |
| Physicochemical Properties and Microbiome of Vineyard Soils from DOP Ribeiro (NW Spain) Are Influenced by Agricultural Management P Blanco, I Rodríguez, V Fernández-Fernández, M Ramil, D Castrillo, ... Microorganisms 12 (3), 595, 2024 | 3 | 2024 |
Mark D WilkinsonIsaac Peral Distinguished Researcher, UPMVerifisert e-postadresse på upm.es