| AMBER 2015 DA Case, JT Berryman, RM Betz, DS Cerutti, TE Cheatham III, TA Darden, ... University of California, San Francisco, 2015 | 5947* | 2015 |
| Building water models: a different approach S Izadi, R Anandakrishnan, AV Onufriev The journal of physical chemistry letters 5 (21), 3863-3871, 2014 | 1043 | 2014 |
| AmberTools DA Case, HM Aktulga, K Belfon, DS Cerutti, GA Cisneros, VWD Cruzeiro, ... Journal of chemical information and modeling 63 (20), 6183-6191, 2023 | 618 | 2023 |
| AMBER 20 DA Case, K Belfon, IY Ben-Shalom, SR Brozell, DS Cerutti, ... University of California: San Francisco, CA, USA, 2020 | 371 | 2020 |
| Accuracy limit of rigid 3-point water models S Izadi, AV Onufriev The Journal of Chemical Physics 145 (7), 074501, 2016 | 309 | 2016 |
| AMBER 2018, University of California, San Francisco, 2018 DA Case, JT Berryman, RM Betz, DS Cerutti, TE Cheatham III, TA Darden, ... There is no corresponding record for this reference, 2015 | 262 | 2015 |
| Water models for biomolecular simulations AV Onufriev, S Izadi Wiley Interdisciplinary Reviews: Computational Molecular Science 8 (2), e1347, 2018 | 210 | 2018 |
| General purpose water model can improve atomistic simulations of intrinsically disordered proteins PS Shabane, S Izadi, AV Onufriev Journal of chemical theory and computation 15 (4), 2620-2634, 2019 | 116 | 2019 |
| Negative regulation of RAF kinase activity by ATP is overcome by 14-3-3-induced dimerization NPD Liau, TJ Wendorff, JG Quinn, M Steffek, W Phung, P Liu, J Tang, ... Nature structural & molecular biology 27 (2), 134-141, 2020 | 86 | 2020 |
| Amber 2020: University of california DA Case, K Belfon, I Ben-Shalom, S Brozell, D Cerutti, T Cheatham, ... San Francisco, 2020 | 80 | 2020 |
| Fc galactosylation follows consecutive reaction kinetics and enhances immunoglobulin G hexamerization for complement activation B Wei, X Gao, L Cadang, S Izadi, P Liu, HM Zhang, E Hecht, J Shim, ... MAbs 13 (1), 1893427, 2021 | 57 | 2021 |
| Protein–Ligand Electrostatic Binding Free Energies from Explicit and Implicit Solvation S Izadi, B Aguilar, AV Onufriev Journal of Chemical Theory and Computation 11 (9), 4450-4459, 2015 | 55 | 2015 |
| Dissecting the molecular basis of high viscosity of monospecific and bispecific IgG antibodies C Tilegenova, S Izadi, J Yin, CS Huang, J Wu, D Ellerman, SG Hymowitz, ... MAbs 12 (1), 1692764, 2020 | 44 | 2020 |
| Why computed protein folding landscapes are sensitive to the water model R Anandakrishnan, S Izadi, AV Onufriev Journal of chemical theory and computation 15 (1), 625-636, 2018 | 40 | 2018 |
| Multiscale coarse-grained approach to investigate self-association of antibodies S Izadi, TW Patapoff, BT Walters Biophysical journal 118 (11), 2741-2754, 2020 | 39 | 2020 |
| Point charges optimally placed to represent the multipole expansion of charge distributions R Anandakrishnan, C Baker, S Izadi, AV Onufriev PloS one 8 (7), e67715, 2013 | 38 | 2013 |
| Antibody–receptor interactions mediate antibody-dependent cellular cytotoxicity Y Sun, S Izadi, M Callahan, G Deperalta, AT Wecksler Journal of Biological Chemistry 297 (1), 2021 | 36 | 2021 |
| Grid-based surface generalized Born model for calculation of electrostatic binding free energies N Forouzesh, S Izadi, AV Onufriev Journal of chemical information and modeling 57 (10), 2505-2513, 2017 | 36 | 2017 |
| Implicit Solvent Model for Million-Atom Atomistic Simulations: Insights into the Organization of 30-nm Chromatin Fiber S Izadi, R Anandakrishnan, AV Onufriev Journal of Chemical Theory and Computation, 2016 | 36 | 2016 |
| Structural basis for SHOC2 modulation of RAS signalling NPD Liau, MC Johnson, S Izadi, L Gerosa, M Hammel, JM Bruning, ... Nature 609 (7926), 400-407, 2022 | 35 | 2022 |
Alexey OnufrievVirginia TechVerifisert e-postadresse på vt.edu