Paul DW Kirk

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Michael P H StumpfProfessor of Theoretical Systems Biology, University of MelbourneVerifisert e-postadresse på unimelb.edu.au
Sylvia RichardsonDirector of MRC Biostatistics Unit and Professor of Biostatistics, University of CambridgeVerifisert e-postadresse på mrc-bsu.cam.ac.uk
Chris P BarnesUniversity College LondonVerifisert e-postadresse på ucl.ac.uk
kathryn lilleyProfessor of Cellular DynamicsVerifisert e-postadresse på cam.ac.uk
Oliver M. CrookMRC Fellow, University of OxfordVerifisert e-postadresse på chem.ox.ac.uk
Laurent Gattode Duve Institute, UCLouvainVerifisert e-postadresse på uclouvain.be
Chris WallaceUniversity of CambridgeVerifisert e-postadresse på cam.ac.uk
Stephen BurgessUniversity of Cambridge, MRC Biostatistics UnitVerifisert e-postadresse på medschl.cam.ac.uk
Juliane LiepeMax Planck Institute for Biophysical ChemistryVerifisert e-postadresse på mpibpc.mpg.de
Sarah FilippiReader, Imperial College LondonVerifisert e-postadresse på imperial.ac.uk
Zoubin GhahramaniProfessor, University of Cambridge, and Distinguished Researcher, GoogleVerifisert e-postadresse på eng.cam.ac.uk
Ann BabtieUniversity of ExeterVerifisert e-postadresse på exeter.ac.uk
Jim GriffinUniversity College LondonVerifisert e-postadresse på ucl.ac.uk
Shinya KurodaBiological Sciences, University of TokyoVerifisert e-postadresse på bs.s.u-tokyo.ac.jp
Lisa Breckels (née Simpson)Senior Research Associate, University of CambridgeVerifisert e-postadresse på cam.ac.uk
Alex LewinAssociate Professor in Biostatistics, London School of Hygiene and Tropical MedicineVerifisert e-postadresse på lshtm.ac.uk
Sungsam GongDepartment of Obstetrics and Gynaecology, University of CambridgeVerifisert e-postadresse på cam.ac.uk
Ulla SovioPrincipal Research Associate in Applied Medical Statistics, University of CambridgeVerifisert e-postadresse på medschl.cam.ac.uk
D. S Charnock-JonesProfessor of Reproductive Biology, University of CambridgeVerifisert e-postadresse på cam.ac.uk
Francesca GaccioliSenior Research Associate, University of CambridgeVerifisert e-postadresse på medschl.cam.ac.uk

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Paul DW Kirk

University of Cambridge

Verifisert e-postadresse på mrc-bsu.cam.ac.uk - Startside

Biostatistics Machine Learning


Tittel Sorter etter sitater Sorter etter år Sorter etter tittel	Sitert av Sitert av	År
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ... Nature communications 10 (1), 2674, 2019	358*	2019
A fast and efficient colocalization algorithm for identifying shared genetic risk factors across multiple traits CN Foley, JR Staley, PG Breen, BB Sun, PDW Kirk, S Burgess, ... Nature communications 12 (1), 764, 2021	352	2021
A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation J Liepe, P Kirk, S Filippi, T Toni, CP Barnes, MPH Stumpf Nature protocols 9 (2), 439-456, 2014	273	2014
Bayesian correlated clustering to integrate multiple datasets P Kirk, JE Griffin, RS Savage, Z Ghahramani, DL Wild Bioinformatics 28 (24), 3290-3297, 2012	270	2012
ABC-SysBio—approximate Bayesian computation in Python with GPU support J Liepe, C Barnes, E Cule, K Erguler, P Kirk, T Toni, MPH Stumpf Bioinformatics 26 (14), 1797-1799, 2010	185	2010
Model selection in systems and synthetic biology P Kirk, T Thorne, MPH Stumpf Current opinion in biotechnology 24 (4), 767-774, 2013	153	2013
A comprehensive evaluation of nasal and bronchial cytokines and chemokines following experimental rhinovirus infection in allergic asthma: increased interferons (IFN-γ and IFN … TT Hansel, T Tunstall, MB Trujillo-Torralbo, B Shamji, A Del-Rosario, ... EBioMedicine 19, 128-138, 2017	141	2017
Topological sensitivity analysis for systems biology AC Babtie, P Kirk, MPH Stumpf Proceedings of the National Academy of Sciences 111 (52), 18507-18512, 2014	119	2014
The RNA landscape of the human placenta in health and disease S Gong, F Gaccioli, J Dopierala, U Sovio, E Cook, PJ Volders, L Martens, ... Nature Communications 12 (1), 2639, 2021	113	2021
Gaussian process regression bootstrapping: exploring the effects of uncertainty in time course data PDW Kirk, MPH Stumpf Bioinformatics 25 (10), 1300-1306, 2009	100	2009
Systems biology (un) certainties PDW Kirk, AC Babtie, MPH Stumpf Science 350 (6259), 386-388, 2015	97	2015
A general moment expansion method for stochastic kinetic models A Ale, P Kirk, MPH Stumpf The Journal of chemical physics 138 (17), 2013	90	2013
Multivariate moment closure techniques for stochastic kinetic models E Lakatos, A Ale, PDW Kirk, MPH Stumpf The Journal of chemical physics 143 (9), 2015	88	2015
Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements EJ Cooke, RS Savage, PDW Kirk, R Darkins, DL Wild BMC bioinformatics 12, 1-12, 2011	82	2011
Longitudinal proteomic profiling of dialysis patients with COVID-19 reveals markers of severity and predictors of death J Gisby, CL Clarke, N Medjeral-Thomas, TH Malik, A Papadaki, ... Elife 10, e64827, 2021	81	2021
Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach P Meyer, T Cokelaer, D Chandran, KH Kim, PR Loh, G Tucker, M Lipson, ... BMC systems biology 8, 1-18, 2014	79	2014
Model selection in systems biology depends on experimental design D Silk, PDW Kirk, CP Barnes, T Toni, MPH Stumpf PLoS computational biology 10 (6), e1003650, 2014	77	2014
MR-Clust: clustering of genetic variants in Mendelian randomization with similar causal estimates CN Foley, AM Mason, PDW Kirk, S Burgess Bioinformatics 37 (4), 531-541, 2021	72	2021
Robustness of MEK-ERK dynamics and origins of cell-to-cell variability in MAPK signaling S Filippi, CP Barnes, PDW Kirk, T Kudo, K Kunida, SS McMahon, ... Cell reports 15 (11), 2524-2535, 2016	72	2016
A Bayesian mixture modelling approach for spatial proteomics OM Crook, CM Mulvey, PDW Kirk, KS Lilley, L Gatto PLoS computational biology 14 (11), e1006516, 2018	61	2018

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