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Marcin J. Skwark
Marcin J. Skwark
Andre navnMarcin Skwark
Bioinformatics Lead, InstaDeep
Verifisert e-postadresse på skwark.pl
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SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology
H Viklund, A Bernsel, M Skwark, A Elofsson
Bioinformatics 24 (24), 2928-2929, 2008
2782008
Nucleotide Transformer: building and evaluating robust foundation models for human genomics
H Dalla-Torre, L Gonzalez, J Mendoza-Revilla, N Lopez Carranza, ...
Nature Methods, 1-11, 2024
2262024
Improved contact predictions using the recognition of protein like contact patterns
MJ Skwark, D Raimondi, M Michel, A Elofsson
PLoS computational biology 10 (11), e1003889, 2014
1882014
PconsFold: improved contact predictions improve protein models
M Michel, S Hayat, MJ Skwark, C Sander, DS Marks, A Elofsson
Bioinformatics 30 (17), i482-i488, 2014
1132014
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis
MJ Skwark, NJ Croucher, S Puranen, C Chewapreecha, M Pesonen, ...
PLoS genetics 13 (2), e1006508, 2017
1112017
PconsC: combination of direct information methods and alignments improves contact prediction
MJ Skwark, A Abdel-Rehim, A Elofsson
Bioinformatics 29 (14), 1815-1816, 2013
1022013
Improving contact prediction along three dimensions
C Feinauer, MJ Skwark, A Pagnani, E Aurell
PLoS computational biology 10 (10), e1003847, 2014
892014
Assessment of global and local model quality in CASP8 using Pcons and ProQ
P Larsson, MJ Skwark, B Wallner, A Elofsson
Proteins: Structure, Function, and Bioinformatics 77 (S9), 167-172, 2009
852009
Discoidin domain receptor 1 kinase activity is required for regulating collagen IV synthesis
CM Borza, Y Su, TL Tran, L Yu, N Steyns, KJ Temple, MJ Skwark, J Meiler, ...
Matrix Biology 57, 258-271, 2017
532017
Protein contact prediction from amino acid co-evolution using convolutional networks for graph-valued images
V Golkov, MJ Skwark, D Alexey, T Brox, J Meiler, D Cremers
Advances in Neural Information Processing Systems, 730-738, 2016
532016
Predicting accurate contacts in thousands of Pfam domain families using PconsC3
M Michel, MJ Skwark, D Menéndez Hurtado, M Ekeberg, A Elofsson
Bioinformatics 33 (18), 2859-2866, 2017
512017
Mycobacterial genomics and structural bioinformatics: opportunities and challenges in drug discovery
VP Waman, SC Vedithi, SE Thomas, BP Bannerman, A Munir, MJ Skwark, ...
Emerging Microbes & Infections 8 (1), 109-118, 2019
382019
PconsD: ultra rapid, accurate model quality assessment for protein structure prediction
MJ Skwark, A Elofsson
Bioinformatics 29 (14), 1817-1818, 2013
362013
Early computational detection of potential high-risk SARS-CoV-2 variants
K Beguir, MJ Skwark, Y Fu, T Pierrot, NL Carranza, A Laterre, I Kadri, ...
Computers in biology and medicine 155, 106618, 2023
352023
Mycobacterium abscessus pathogenesis identified by phenogenomic analyses
L Boeck, S Burbaud, M Skwark, WH Pearson, J Sangen, AW Wuest, ...
Nature Microbiology 7 (9), 1431-1441, 2022
332022
The structural basis of Cdc7-Dbf4 kinase dependent targeting and phosphorylation of the MCM2-7 double hexamer
A Saleh, Y Noguchi, R Aramayo, ME Ivanova, KM Stevens, A Montoya, ...
Nature communications 13 (1), 2915, 2022
312022
Computational saturation mutagenesis to predict structural consequences of systematic mutations in the beta subunit of RNA polymerase in Mycobacterium leprae
SC Vedithi, CHM Rodrigues, S Portelli, MJ Skwark, M Das, DB Ascher, ...
Computational and Structural Biotechnology Journal 18, 271-286, 2020
292020
A foundational large language model for edible plant genomes
J Mendoza-Revilla, E Trop, L Gonzalez, M Roller, H Dalla-Torre, ...
Communications Biology 7 (1), 835, 2024
242024
Membrane remodeling capacity of a vesicle‐inducing glycosyltransferase
C Ge, J Gómez‐Llobregat, MJ Skwark, JM Ruysschaert, Å Wieslander, ...
The FEBS journal 281 (16), 3667-3684, 2014
242014
De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments
K Eloff, K Kalogeropoulos, O Morell, A Mabona, JB Jespersen, W Williams, ...
bioRxiv, 2023.08. 30.555055, 2023
222023
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Artikler 1–20