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Rasmus Hansen Kirkegaard
Rasmus Hansen Kirkegaard
Staff scientist at Aalborg University
Verifisert e-postadresse på bio.aau.dk
Tittel
Sitert av
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År
Complete nitrification by Nitrospira bacteria
H Daims, EV Lebedeva, P Pjevac, P Han, C Herbold, M Albertsen, ...
Nature 528 (7583), 504-509, 2015
25392015
Back to Basics – The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities
PHN Mads Albertsen , Søren M. Karst , Anja S. Ziegler , Rasmus H. Kirkegaard
PLoS ONE 10 (7), e0132783, 2015
5742015
ampvis2: an R package to analyse and visualise 16S rRNA amplicon data
KSS Andersen, RH Kirkegaard, SM Karst, M Albertsen
bioRxiv, 299537, 2018
5492018
Experimental methods in wastewater treatment
M Albertsen, RH Kirkegaard, MS Dueholm, PHÊ Nielsen
Experimental Methods in Wastewater Treatment, 2016
402*2016
High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing
SM Karst, RM Ziels, RH Kirkegaard, EA Sørensen, D McDonald, Q Zhu, ...
Nature Methods 18 (2), 165-169, 2021
3672021
Oxford Nanopore R10. 4 long-read sequencing enables the generation of near-finished bacterial genomes from pure cultures and metagenomes without short-read or reference polishing
M Sereika, RH Kirkegaard, SM Karst, TY Michaelsen, EA Sørensen, ...
Nature methods 19 (7), 823-826, 2022
3432022
Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing
CM Singleton, F Petriglieri, JM Kristensen, RH Kirkegaard, TY Michaelsen, ...
Nature Communications 12 (1), 1-13, 2021
280*2021
Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias
SM Karst, MS Dueholm, SJ McIlroy, RH Kirkegaard, PH Nielsen, ...
Nature biotechnology, 2018
2082018
Culture-Independent Analyses Reveal Novel Anaerolineaceae as Abundant Primary Fermenters in Anaerobic Digesters Treating Waste Activated Sludge
SJ McIlroy, RH Kirkegaard, MS Dueholm, E Fernando, SM Karst, ...
Frontiers in Microbiology 8, 1134, 2017
2082017
The impact of immigration on microbial community composition in full-scale anaerobic digesters
RH Kirkegaard, SJ McIlroy, JM Kristensen, M Nierychlo, SM Karst, ...
Scientific Reports 7 (1), 9343, 2017
1892017
MiDAS 2.0: an ecosystem-specific taxonomy and online database for the organisms of wastewater treatment systems expanded for anaerobic digester groups
SJ McIlroy, RH Kirkegaard, B McIlroy, M Nierychlo, JM Kristensen, ...
Database 2017, bax016, 2017
1832017
Novel syntrophic bacteria in full-scale anaerobic digesters revealed by genome-centric metatranscriptomics
L Hao, TY Michaelsen, CM Singleton, G Dottorini, RH Kirkegaard, ...
The ISME Journal 14 (4), 906-918, 2020
1482020
Characterization of the First “Candidatus Nitrotoga” Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria
K Kitzinger, H Koch, S Lücker, CJ Sedlacek, C Herbold, J Schwarz, ...
MBio 9 (4), 10.1128/mbio. 01186-18, 2018
1162018
Cultivation and Genomic Analysis of “Candidatus Nitrosocaldus islandicus,” an Obligately Thermophilic, Ammonia-Oxidizing Thaumarchaeon from a Hot Spring …
A Daebeler, CW Herbold, J Vierheilig, CJ Sedlacek, P Pjevac, ...
Frontiers in microbiology 9, 193, 2018
962018
Integrative microbial community analysis reveals full-scale enhanced biological phosphorus removal under tropical conditions
Y Law, RH Kirkegaard, AA Cokro, X Liu, K Arumugam, C Xie, ...
Scientific Reports 6 (1), 25719, 2016
872016
Genomic and in situ investigations of the novel uncultured Chloroflexi associated with 0092 morphotype filamentous bulking in activated sludge
SJ McIlroy, SM Karst, M Nierychlo, MS Dueholm, M Albertsen, ...
The ISME journal 10 (9), 2223-2234, 2016
812016
mmgenome: a toolbox for reproducible genome extraction from metagenomes
SM Karst, RH Kirkegaard, M Albertsen
bioRxiv, 059121, 2016
792016
Characterizing the growing microorganisms at species level in 46 anaerobic digesters at Danish wastewater treatment plants: A six-year survey on microbial community structure …
C Jiang, M Peces, MH Andersen, S Kucheryavskiy, M Nierychlo, ...
Water Research 193, 116871, 2021
732021
Novel prosthecate bacteria from the candidate phylum Acetothermia
L Hao, SJ McIlroy, RH Kirkegaard, SM Karst, WEY Fernando, H Aslan, ...
The ISME journal 12 (9), 2225-2237, 2018
652018
Characterization of the first “Candidatus Nitrotoga” isolate reveals metabolic versatility and separate evolution of widespread nitrite-oxidizing bacteria. mBio 9: e01186-18
K Kitzinger, H Koch, S Lücker, CJ Sedlacek, C Herbold, J Schwarz, ...
Klotz, MG, Arp, DJ, Chain, PS, El-Sheikh, AF, Hauser, LJ, Hommes, NG, et al …, 2018
602018
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