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Jian Peng
Jian Peng
Helixon
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Template-based protein structure modeling using the RaptorX web server
M Källberg, H Wang, S Wang, J Peng, Z Wang, H Lu, J Xu
Nature protocols 7 (8), 1511-1522, 2012
19492012
A community effort to assess and improve drug sensitivity prediction algorithms
JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ...
Nature biotechnology 32 (12), 1202-1212, 2014
8112014
A network integration approach for drug-target interaction prediction and computational drug repositioning from heterogeneous information
Y Luo, X Zhao, J Zhou, J Yang, Y Zhang, W Kuang, J Peng, L Chen, ...
Nature communications 8 (1), 573, 2017
8042017
Protein secondary structure prediction using deep convolutional neural fields
S Wang, J Peng, J Ma, J Xu
Scientific reports 6 (1), 18962, 2016
7042016
Widespread macromolecular interaction perturbations in human genetic disorders
N Sahni, S Yi, M Taipale, JIF Bass, J Coulombe-Huntington, F Yang, ...
Cell 161 (3), 647-660, 2015
6042015
A high-performance and in-season classification system of field-level crop types using time-series Landsat data and a machine learning approach
Y Cai, K Guan, J Peng, S Wang, C Seifert, B Wardlow, Z Li
Remote sensing of environment 210, 35-47, 2018
5302018
Integrating satellite and climate data to predict wheat yield in Australia using machine learning approaches
Y Cai, K Guan, D Lobell, AB Potgieter, S Wang, J Peng, T Xu, S Asseng, ...
Agricultural and forest meteorology 274, 144-159, 2019
5082019
A quantitative chaperone interaction network reveals the architecture of cellular protein homeostasis pathways
M Taipale, G Tucker, J Peng, I Krykbaeva, ZY Lin, B Larsen, H Choi, ...
Cell 158 (2), 434-448, 2014
4682014
RaptorX: exploiting structure information for protein alignment by statistical inference
J Peng, J Xu
Proteins: Structure, Function, and Bioinformatics 79 (S10), 161-171, 2011
4592011
Empower sequence labeling with task-aware neural language model
L Liu, J Shang, X Ren, F Xu, H Gui, J Peng, J Han
Proceedings of the AAAI conference on artificial intelligence 32 (1), 2018
4572018
High-resolution de novo structure prediction from primary sequence
R Wu, F Ding, R Wang, R Shen, X Zhang, S Luo, C Su, Z Wu, Q Xie, ...
BioRxiv, 2022.07. 21.500999, 2022
4512022
Computational solutions for omics data
B Berger, J Peng, M Singh
Nature reviews genetics 14 (5), 333-346, 2013
4292013
Variational Inference for Crowdsourcing
Q Liu, J Peng, A Ihler
Advances in Neural Information Processing Systems 25, 701-709, 2012
4212012
A community computational challenge to predict the activity of pairs of compounds
M Bansal, et al
Nature Biotechnology, 2014
3422014
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ...
Nature communications 10 (1), 2674, 2019
3262019
Selection bias at the heterosexual HIV-1 transmission bottleneck
JM Carlson, M Schaefer, DC Monaco, R Batorsky, DT Claiborne, J Prince, ...
Science 345 (6193), 1254031, 2014
2972014
Compact integration of multi-network topology for functional analysis of genes
H Cho, B Berger, J Peng
Cell systems 3 (6), 540-548. e5, 2016
2662016
A 3D generative model for structure-based drug design
S Luo, J Guan, J Ma, J Peng
Advances in Neural Information Processing Systems 34, 6229-6239, 2021
2322021
Conditional neural fields
J Peng, L Bo, J Xu
NIPS 2009, 2009
2282009
Antigen-specific antibody design and optimization with diffusion-based generative models for protein structures
S Luo, Y Su, X Peng, S Wang, J Peng, J Ma
Advances in Neural Information Processing Systems 35, 9754-9767, 2022
2222022
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