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Minkyung Baek
Minkyung Baek
School of Biological Sciences, Seoul National University
Verifisert e-postadresse på snu.ac.kr
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Accurate prediction of protein structures and interactions using a three-track neural network
M Baek, F DiMaio, I Anishchenko, J Dauparas, S Ovchinnikov, GR Lee, ...
Science 373 (6557), 871-876, 2021
45812021
De novo design of protein structure and function with RFdiffusion
JL Watson, D Juergens, NR Bennett, BL Trippe, J Yim, HE Eisenach, ...
Nature 620 (7976), 1089-1100, 2023
1207*2023
Computed structures of core eukaryotic protein complexes
IR Humphreys, J Pei, M Baek, A Krishnakumar, I Anishchenko, ...
Science 374 (6573), eabm4805, 2021
4562021
Generalized biomolecular modeling and design with RoseTTAFold All-Atom
R Krishna, J Wang, W Ahern, P Sturmfels, P Venkatesh, I Kalvet, GR Lee, ...
Science 384 (6693), eadl2528, 2024
4162024
Scaffolding protein functional sites using deep learning
J Wang, S Lisanza, D Juergens, D Tischer, JL Watson, KM Castro, ...
Science 377 (6604), 387-394, 2022
3552022
Improved protein structure refinement guided by deep learning based accuracy estimation
N Hiranuma, H Park, M Baek, I Anishchenko, J Dauparas, D Baker
Nature communications 12 (1), 1340, 2021
2452021
Accurate prediction of protein–nucleic acid complexes using RoseTTAFoldNA
M Baek, R McHugh, I Anishchenko, H Jiang, D Baker, F DiMaio
Nature Methods, 1-5, 2023
207*2023
Improving de novo protein binder design with deep learning
NR Bennett, B Coventry, I Goreshnik, B Huang, A Allen, D Vafeados, ...
Nature Communications 14 (1), 2625, 2023
1912023
Hallucinating symmetric protein assemblies
BIM Wicky, LF Milles, A Courbet, RJ Ragotte, J Dauparas, E Kinfu, S Tipps, ...
Science 378 (6615), 56-61, 2022
1732022
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
1682016
GalaxyHomomer: a web server for protein homo-oligomer structure prediction from a monomer sequence or structure
M Baek, T Park, L Heo, C Park, C Seok
Nucleic Acids Research 45 (W1), W320-W324, 2017
1362017
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
1282019
Deep learning and protein structure modeling
M Baek, D Baker
Nature Methods 19 (1), 13-14, 2022
1212022
The challenge of modeling protein assemblies: the CASP12‐CAPRI experiment
MF Lensink, S Velankar, M Baek, L Heo, C Seok, SJ Wodak
Proteins: Structure, Function, and Bioinformatics 86, 257-273, 2018
1052018
Efficient and accurate prediction of protein structure using RoseTTAFold2
M Baek, I Anishchenko, I Humphreys, Q Cong, D Baker, F DiMaio
bioRxiv, 2023.05. 24.542179, 2023
942023
Top-down design of protein architectures with reinforcement learning
ID Lutz, S Wang, C Norn, A Courbet, AJ Borst, YT Zhao, A Dosey, L Cao, ...
Science 380 (6642), 266-273, 2023
902023
Peptide-binding specificity prediction using fine-tuned protein structure prediction networks
A Motmaen, J Dauparas, M Baek, MH Abedi, D Baker, P Bradley
Proceedings of the National Academy of Sciences 120 (9), e2216697120, 2023
732023
Force Field Optimization Guided by Small Molecule Crystal Lattice Data Enables Consistent Sub-Angstrom Protein–Ligand Docking
H Park, G Zhou, M Baek, D Baker, F DiMaio
Journal of Chemical Theory and Computation 17 (3), 2000-2010, 2021
722021
Assessment of protein model structure accuracy estimation in CASP13: Challenges in the era of deep learning
J Won, M Baek, B Monastyrskyy, A Kryshtafovych, C Seok
Proteins: Structure, Function, and Bioinformatics 87 (12), 1351-1360, 2019
632019
GalaxyDock BP2 score: a hybrid scoring function for accurate protein–ligand docking
M Baek, WH Shin, HW Chung, C Seok
Journal of Computer-Aided Molecular Design 31 (7), 653-666, 2017
572017
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Artikler 1–20