Adaptive rheology and ordering of cell cytoskeleton govern matrix rigidity sensing M Gupta, BR Sarangi, J Deschamps, Y Nematbakhsh, A Callan-Jones, ... Nature communications 6 (1), 7525, 2015 | 339 | 2015 |
Real-time 3D single-molecule localization using experimental point spread functions Y Li, M Mund, P Hoess, J Deschamps, U Matti, B Nijmeijer, VJ Sabinina, ... Nature methods 15 (5), 367-369, 2018 | 282 | 2018 |
LABKIT: labeling and segmentation toolkit for big image data M Arzt, J Deschamps, C Schmied, T Pietzsch, D Schmidt, P Tomancak, ... Frontiers in computer science 4, 777728, 2022 | 223 | 2022 |
Systematic nanoscale analysis of endocytosis links efficient vesicle formation to patterned actin nucleation M Mund, JA van Der Beek, J Deschamps, S Dmitrieff, P Hoess, ... Cell 174 (4), 884-896. e17, 2018 | 210 | 2018 |
Optimizing imaging speed and excitation intensity for single-molecule localization microscopy R Diekmann, M Kahnwald, A Schoenit, J Deschamps, U Matti, J Ries Nature methods 17 (9), 909-912, 2020 | 100 | 2020 |
Efficient homogeneous illumination and optical sectioning for quantitative single-molecule localization microscopy J Deschamps, A Rowald, J Ries Optics express 24 (24), 28080-28090, 2016 | 80 | 2016 |
3D superresolution microscopy by supercritical angle detection J Deschamps, M Mund, J Ries Optics Express 22 (23), 29081-29091, 2014 | 77 | 2014 |
Cost-efficient open source laser engine for microscopy D Schröder*, J Deschamps*, A Dasgupta, U Matti, J Ries Biomedical optics express 11 (2), 609-623, 2020 | 38 | 2020 |
A real-time compression library for microscopy images B Balázs, J Deschamps, M Albert, J Ries, L Hufnagel bioRxiv, 164624, 2017 | 36* | 2017 |
Direct supercritical angle localization microscopy for nanometer 3D superresolution A Dasgupta*, J Deschamps*, U Matti, U Hübner, J Becker, S Strauss, ... Nature communications 12 (1), 1-9, 2021 | 31 | 2021 |
Whole-head recording of chemosensory activity in the marine annelid Platynereis dumerilii TF Chartier, J Deschamps, W Dürichen, G Jékely, D Arendt Royal Society Open Biology 8 (10), 180139, 2018 | 26 | 2018 |
EMU: reconfigurable graphical user interfaces for Micro-Manager J Deschamps, J Ries BMC Bioinformatics 21 (451), 2020 | 25 | 2020 |
Photon-free (s) CMOS camera characterization for artifact reduction in high-and super-resolution microscopy R Diekmann, J Deschamps, Y Li, T Deguchi, A Tschanz, M Kahnwald, ... Nature Communications 13 (1), 3362, 2022 | 23 | 2022 |
Using AI in bioimage analysis to elevate the rate of scientific discovery as a community DD Nogare, M Hartley, J Deschamps, J Ellenberg, F Jug Nature methods 20 (7), 973-975, 2023 | 21 | 2023 |
MicroFPGA: An affordable FPGA platform for microscope control J Deschamps, C Kieser, P Hoess, T Deguchi, J Ries HardwareX 13, e00407, 2023 | 10 | 2023 |
Better research software tools to elevate the rate of scientific discovery or why we need to invest in research software engineering J Deschamps, D Dalle Nogare, F Jug Frontiers in Bioinformatics 3, 1255159, 2023 | 5 | 2023 |
CALIPERS: Cell cycle-aware live imaging for phenotyping experiments and regeneration studies M Di Sante, M Pezzotti, J Zimmermann, A Enrico, J Deschamps, E Balmas, ... bioRxiv, 2024.12. 19.629259, 2024 | 1 | 2024 |
Hijacking and integration of algal plastids and mitochondria in a polar planktonic host AK Rao, D Yee, F Chevalier, C Lekieffre, M Pavie, M Olivetta, O Dudin, ... bioRxiv, 2024.10. 20.619283, 2024 | 1 | 2024 |
MicroSSIM: Improved Structural Similarity for Comparing Microscopy Data A Ashesh, J Deschamps, F Jug arXiv preprint arXiv:2408.08747, 2024 | 1 | 2024 |
FeatureForest: the power of foundation models, the usability of random forests M Seifi, DD Nogare, J Battagliotti, V Galinova, AK Rao, ... bioRxiv, 2024.12. 12.628025, 2024 | | 2024 |