| Characterizing the RNA targets and position-dependent splicing regulation by TDP-43 JR Tollervey, T Curk, B Rogelj, M Briese, M Cereda, M Kayikci, J König, ... Nature neuroscience 14 (4), 452-458, 2011 | 1290 | 2011 |
| iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution J König, K Zarnack, G Rot, T Curk, M Kayikci, B Zupan, DJ Turner, ... Nature structural & molecular biology 17 (7), 909-915, 2010 | 1279 | 2010 |
| Widespread binding of FUS along nascent RNA regulates alternative splicing in the brain B Rogelj, LE Easton, GK Bogu, LW Stanton, G Rot, T Curk, B Zupan, ... Scientific reports 2 (1), 603, 2012 | 336 | 2012 |
| Analysis of alternative splicing associated with aging and neurodegeneration in the human brain JR Tollervey, Z Wang, T Hortobágyi, JT Witten, K Zarnack, M Kayikci, ... Genome research 21 (10), 1572-1582, 2011 | 281 | 2011 |
| iCLIP predicts the dual splicing effects of TIA-RNA interactions Z Wang, M Kayikci, M Briese, K Zarnack, NM Luscombe, G Rot, B Zupan, ... PLoS biology 8 (10), e1000530, 2010 | 272 | 2010 |
| iCLIP-transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution J Konig, K Zarnack, G Rot, T Curk, M Kayikci, B Zupan, DJ Turner, ... Journal of visualized experiments: JoVE, 2638, 2011 | 250 | 2011 |
| Conserved developmental transcriptomes in evolutionarily divergent species A Parikh, ER Miranda, M Katoh-Kurasawa, D Fuller, G Rot, L Zagar, ... Genome biology 11, 1-12, 2010 | 209 | 2010 |
| CELF4 regulates translation and local abundance of a vast set of mRNAs, including genes associated with regulation of synaptic function JL Wagnon, M Briese, W Sun, CL Mahaffey, T Curk, G Rot, J Ule, ... PLoS genetics 8 (11), e1003067, 2012 | 133 | 2012 |
| Cross-regulation between TDP-43 and paraspeckles promotes pluripotency-differentiation transition M Modic, M Grosch, G Rot, S Schirge, T Lepko, T Yamazaki, FCY Lee, ... Molecular cell 74 (5), 951-965. e13, 2019 | 122 | 2019 |
| High-Resolution RNA Maps Suggest Common Principles of Splicing and Polyadenylation Regulation by TDP-43 G Rot, Z Wang, I Huppertz, M Modic, T Lenče, M Hallegger, N Haberman, ... Cell Reports 19 (5), 1056-1067, 2017 | 111 | 2017 |
| dictyExpress: a Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface G Rot, A Parikh, T Curk, A Kuspa, G Shaulsky, B Zupan BMC bioinformatics 10, 1-8, 2009 | 98 | 2009 |
| Bacterial discrimination by dictyostelid amoebae reveals the complexity of ancient interspecies interactions W Nasser, B Santhanam, ER Miranda, A Parikh, K Juneja, G Rot, C Dinh, ... Current Biology 23 (10), 862-872, 2013 | 72 | 2013 |
| RNAmotifs: prediction of multivalent RNA motifs that control alternative splicing M Cereda, U Pozzoli, G Rot, P Juvan, A Schweitzer, T Clark, J Ule Genome biology 15, 1-12, 2014 | 68 | 2014 |
| SNPsyn: detection and exploration of SNP–SNP interactions T Curk, G Rot, B Zupan Nucleic acids research 39 (suppl_2), W444-W449, 2011 | 49 | 2011 |
| Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data S Bryce-Smith, D Burri, MR Gazzara, CJ Herrmann, W Danecka, ... RNA 29 (12), 1839-1855, 2023 | 14 | 2023 |
| The X-linked splicing regulator MBNL3 has been co-opted to restrict placental growth in eutherians T Spruce, M Plass, A Gohr, D Ray, M Martínez de Lagrán, G Rot, A Nóvoa, ... PLoS biology 20 (4), e3001615, 2022 | 10 | 2022 |
| A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells Y Bai, E Caussinus, S Leo, F Bosshardt, F Myachina, G Rot, MD Robinson, ... BMC genomics 22, 1-38, 2021 | 4 | 2021 |
| A nuclear role for ARGONAUTE-2 in regulation of neuronal alternative polyadenylation R Ravid, A Siany, N Rivkin, C Eitan, H Marmor-Kollet, E Yanowski, ... BioRxiv, 2020.12. 15.422806, 2020 | 3 | 2020 |
| The Arabidopsis U1 snRNP regulates mRNA 3′-end processing AF Mangilet, J Weber, S Schüler, M Adler, EY Mjema, P Heilmann, ... Nature Plants 10 (10), 1514-1531, 2024 | 2 | 2024 |
| Analysis of RNA polyadenylation in healthy and osteoarthritic human articular cartilage P Winstanley-Zarach, G Rot, S Kuba, A Smagul, MJ Peffers, SR Tew International Journal of Molecular Sciences 24 (7), 6611, 2023 | 1 | 2023 |
Tomaž CurkUniversity of Ljubljana, Faculty of Computer and Information ScienceVerifisert e-postadresse på fri.uni-lj.si
