Simon R. Harris

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Stephen BentleyWellcome Sanger InstituteVerifisert e-postadresse på sanger.ac.uk
Nick CroucherImperial CollegeVerifisert e-postadresse på imperial.ac.uk
Matthew HoldenUniversity of St AndrewsVerifisert e-postadresse på st-andrews.ac.uk
Thomas ConnorProfessor, Cardiff University ; Head of Public Health Genomics, Public Health WalesVerifisert e-postadresse på cardiff.ac.uk
Andrew J. PageDirector of Technical Innovation, Theiagen GenomicsVerifisert e-postadresse på quadram.ac.uk
Alison E MatherQuadram Institute BioscienceVerifisert e-postadresse på quadram.ac.uk
Thomas D. OttoUniversity of GlasgowVerifisert e-postadresse på glasgow.ac.uk
Claire ChewapreechaMahidol-Oxford Tropical Medicine Research UnitVerifisert e-postadresse på tropmedres.ac
William HanageHarvard T H Chan School of Public HealthVerifisert e-postadresse på hsph.harvard.edu
unemo magnusVerifisert e-postadresse på amb.edu.pl
Jacqueline A. KeanePathogen Genomics IT ConsultantVerifisert e-postadresse på cambridgebioinformatics.com
Josie BryantUniversity of CambridgeVerifisert e-postadresse på sanger.ac.uk
Helena Seth-SmithUniversity of Zurich, Institute of Medical MicrobiologyVerifisert e-postadresse på seth-smith.org.uk
Sebastien GagneuxSwiss Tropical and Public Health InstituteVerifisert e-postadresse på swisstph.ch
Stephen BakerUniversity of CambridgeVerifisert e-postadresse på medschl.cam.ac.uk
Matthew EllingtonUK Health Security AgencyVerifisert e-postadresse på phe.gov.uk
Edward J. P. CartwrightUniversity of CambridgeVerifisert e-postadresse på cam.ac.uk
Dr Estee TorokUniversity of CambridgeVerifisert e-postadresse på cam.ac.uk
Robert A KingsleyGroup Leader at the Quadram Institute Bioscience, UKVerifisert e-postadresse på quadram.ac.uk
David AanensenProfessor at Big Data Institute, University of OxfordVerifisert e-postadresse på bdi.ox.ac.uk

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Simon R. Harris

Senior Program Officer, Bill & Melinda Gates Foundation

Verifisert e-postadresse på sanger.ac.uk

Metagenomics Genomics Phylogenetics Bioinformatics Bacterial genomics


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A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers M Quail, ME Smith, P Coupland, TD Otto, SR Harris, TR Connor, A Bertoni, ... BMC genomics 13 (1), 341, 2012	2847	2012
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins NJ Croucher, AJ Page, TR Connor, AJ Delaney, JA Keane, SD Bentley, ... Nucleic acids research 43 (3), e15-e15, 2015	2240	2015
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans I Comas, M Coscolla, T Luo, S Borrell, KE Holt, M Kato-Maeda, J Parkhill, ... Nature genetics 45 (10), 1176-1182, 2013	1328	2013
Evolution of MRSA during hospital transmission and intercontinental spread SR Harris, EJ Feil, MTG Holden, MA Quail, EK Nickerson, N Chantratita, ... Science 327 (5964), 469-474, 2010	1295	2010
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data T Carver, SR Harris, M Berriman, J Parkhill, JA McQuillan Bioinformatics 28 (4), 464-469, 2012	1264	2012
SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments AJ Page, B Taylor, AJ Delaney, J Soares, T Seemann, JA Keane, ... Microbial Genomics 2 (4), 2016	1199	2016
Circlator: automated circularization of genome assemblies using long sequencing reads M Hunt, N De Silva, TD Otto, J Parkhill, JA Keane, SR Harris Genome biology 16 (1), 1-10, 2015	1028	2015
Rapid pneumococcal evolution in response to clinical interventions NJ Croucher, SR Harris, C Fraser, MA Quail, J Burton, M van der Linden, ... Science 331 (6016), 430-434, 2011	1015	2011
Emergence and global spread of epidemic healthcare-associated Clostridium difficile M He, F Miyajima, P Roberts, L Ellison, DJ Pickard, MJ Martin, TR Connor, ... Nature Genetics, 2012	849	2012
Evidence for several waves of global transmission in the seventh cholera pandemic A Mutreja, DW Kim, NR Thomson, TR Connor, JH Lee, S Kariuki, ... Nature 477 (7365), 462-465, 2011	837	2011
Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak CU Köser, MTG Holden, MJ Ellington, EJP Cartwright, NM Brown, ... New England Journal of Medicine 366 (24), 2267-2275, 2012	816	2012
Whole-genome sequencing to identify transmission of <i>Mycobacterium abscessus</i> between patients with cystic fibrosis: a retrospective cohort study JM Bryant, DM Grogono, D Greaves, J Foweraker, I Roddick, T Inns, ... The Lancet, 2013	788	2013
Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study SR Harris, EJP Cartwright, ME Török, MTG Holden, NM Brown, ... The Lancet Infectious Diseases 13 (2), 130-136, 2013	687	2013
Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis KI Bos, KM Harkins, A Herbig, M Coscolla, N Weber, I Comas, SA Forrest, ... Nature 514 (7523), 494-497, 2014	667	2014
Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread S David, S Reuter, SR Harris, C Glasner, T Feltwell, S Argimon, ... Nature microbiology 4 (11), 1919-1929, 2019	661	2019
ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads M Hunt, AE Mather, L Sánchez-Busó, AJ Page, J Parkhill, JA Keane, ... Microbial genomics 3 (10), 2017	643	2017
Evolution and transmission of drug-resistant tuberculosis in a Russian population N Casali, V Nikolayevskyy, Y Balabanova, SR Harris, O Ignatyeva, ... Nature genetics 46 (3), 279-286, 2014	612	2014
Emergence and spread of a human-transmissible multidrug-resistant nontuberculous mycobacterium JM Bryant, DM Grogono, D Rodriguez-Rincon, I Everall, KP Brown, ... Science 354 (6313), 751-757, 2016	594	2016
Phandango: an interactive viewer for bacterial population genomics J Hadfield, NJ Croucher, RJ Goater, K Abudahab, DM Aanensen, ... Bioinformatics, btx610, 2017	591	2017
A genomic portrait of the emergence, evolution and global spread of a methicillin resistant Staphylococcus aureus pandemic MTG Holden, LY Hsu, K Kurt, LA Weinert, AE Mather, SR Harris, ... Genome Research, 2013	530	2013

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