Giulio Caravagna

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Alex GraudenziDept. of Informatics, Systems and Communication, Univ. of Milan-BicoccaVerifisert e-postadresse på unimib.it
Marco AntoniottiProfessor of Computer Science, Università degli Studi di Milano-BicoccaVerifisert e-postadresse på unimib.it
Daniele RamazzottiDepartment of Medicine and Surgery, University of Milano-Bicocca, Milano, ItalyVerifisert e-postadresse på unimib.it
Andrea SottorivaHuman TechnopoleVerifisert e-postadresse på fht.org
Trevor A GrahamDirector, Centre for Evolution and Cancer, ICR, LondonVerifisert e-postadresse på icr.ac.uk
Alberto d'OnofrioComputer Sciences for Complex Systems Lab, Università di TriesteVerifisert e-postadresse på units.it
Bud MishraProfessor of Computer Science and MathematicsVerifisert e-postadresse på nyu.edu
Benjamin WernerReader, Barts Cancer Institute, Queen Mary University LondonVerifisert e-postadresse på qmul.ac.uk
Dr George D CresswellSt. Anna Children's Cancer Research InstituteVerifisert e-postadresse på ccri.at
Guido SanguinettiReader in Informatics, University of EdinburghVerifisert e-postadresse på inf.ed.ac.uk
Salvatore MiliteHuman TechnopoleVerifisert e-postadresse på fht.org
Ahmet AcarMiddle East Technical UniversityVerifisert e-postadresse på metu.edu.tr
Marc J WilliamsMemorial Sloan Kettering Cancer CenterVerifisert e-postadresse på mskcc.org
William CrossResearcher, Lecturer, University of ReadingVerifisert e-postadresse på reading.ac.uk
Luis ZapataTeam Leader, Center For Evolution And Cancer, ICRVerifisert e-postadresse på icr.ac.uk
Eszter LakatosAssistant Professor, Chalmers University of TechnologyVerifisert e-postadresse på chalmers.se
Jacob HousehamData Science Team, The Institute of Cancer ResearchVerifisert e-postadresse på icr.ac.uk
Chris P BarnesUniversity College LondonVerifisert e-postadresse på ucl.ac.uk
Nicola CalonaciPost-doc @ Cancer Data Science Lab, Università di TriesteVerifisert e-postadresse på sissa.it
chela jamesFondazione Human Technopole, MilanVerifisert e-postadresse på fht.org

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Giulio Caravagna

Cancer Data Science Laboratory, University of Trieste

Verifisert e-postadresse på units.it - Startside

Cancer Data Science Cancer Evolution Bioinformatics Computational Biology


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Detecting repeated cancer evolution from multi-region tumor sequencing data G Caravagna, Y Giarratano, D Ramazzotti, I Tomlinson, TA Graham, ... Nature Methods 15 (9), 707-714, 2018	180	2018
Phenotypic plasticity and genetic control in colorectal cancer evolution J Househam, T Heide, GD Cresswell, I Spiteri, C Kimberley, L Zapata, ... Nature 611 (7937), 744-753, 2022	124	2022
Subclonal reconstruction of tumors by using machine learning and population genetics G Caravagna, T Heide, MJ Williams, L Zapata, D Nichol, K Chkhaidze, ... Nature Genetics 52 (9), 898-907, 2020	124	2020
Exploiting evolutionary steering to induce collateral drug sensitivity in cancer A Acar, D Nichol, J Fernandez-Mateos, GD Cresswell, I Barozzi, SP Hong, ... Nature Communications 11 (1), 1923, 2020	112	2020
Chromatin Velocity reveals epigenetic dynamics by single-cell profiling of heterochromatin and euchromatin M Tedesco, F Giannese, D Lazarević, V Giansanti, D Rosano, S Monzani, ... Nature Biotechnology 40 (2), 235-244, 2022	104	2022
CAPRI: efficient inference of cancer progression models from cross-sectional data D Ramazzotti, G Caravagna, L Olde Loohuis, A Graudenzi, I Korsunsky, ... Bioinformatics 31 (18), 3016-3026, 2015	102	2015
Algorithmic methods to infer the evolutionary trajectories in cancer progression G Caravagna, A Graudenzi, D Ramazzotti, R Sanz-Pamplona, L De Sano, ... PNAS 113 (28), E4025–E4034, 2016	93	2016
The co-evolution of the genome and epigenome in colorectal cancer T Heide, J Househam, GD Cresswell, I Spiteri, C Lynn, M Mossner, ... Nature 611 (7937), 733-743, 2022	88	2022
Evolutionary dynamics of residual disease in human glioblastoma I Spiteri, G Caravagna, GD Cresswell, A Vatsiou, D Nichol, A Acar, ... Annals of Oncology 30 (3), 456-463, 2019	80	2019
Spatially constrained tumour growth affects the patterns of clonal selection and neutral drift in cancer genomic data K Chkhaidze, T Heide, B Werner, MJ Williams, W Huang, G Caravagna, ... PLoS Computational biology 15 (7), e1007243, 2019	79	2019
Tumour suppression by immune system through stochastic oscillations G Caravagna, A d’Onofrio, P Milazzo, R Barbuti Journal of Theoretical Biology 265 (3), 336-345, 2010	75*	2010
Inferring tree causal models of cancer progression with probability raising LO Loohuis, G Caravagna, A Graudenzi, D Ramazzotti, G Mauri, ... PloS One 9 (10), e108358, 2014	72	2014
Signatures of TOP1 transcription-associated mutagenesis in cancer and germline MAM Reijns, DA Parry, TC Williams, F Nadeu, RL Hindshaw, ... Nature, 2022	54	2022
The calculus of looping sequences R Barbuti, G Caravagna, A Maggiolo–Schettini, P Milazzo, G Pardini Formal Methods for Computational Systems Biology: 8th International School …, 2008	49	2008
Immune selection determines tumor antigenicity and influences response to checkpoint inhibitors L Zapata, G Caravagna, MJ Williams, E Lakatos, K AbdulJabbar, ... Nature Genetics 55 (3), 451-460, 2023	47	2023
TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data L De Sano, G Caravagna, D Ramazzotti, A Graudenzi, G Mauri, B Mishra, ... Bioinformatics 32 (12), 1911-1913, 2016	47	2016
The interplay of intrinsic and extrinsic bounded noises in biomolecular networks G Caravagna, G Mauri, A d'Onofrio PLoS One 8 (2), e51174, 2013	47	2013
Germline MBD4 deficiency causes a multi-tumor predisposition syndrome C Palles, HD West, E Chew, S Galavotti, C Flensburg, JE Grolleman, ... The American Journal of Human Genetics 109 (5), 953-960, 2022	43	2022
Learning mutational graphs of individual tumour evolution from single-cell and multi-region sequencing data D Ramazzotti, A Graudenzi, L De Sano, M Antoniotti, G Caravagna BMC Bioinformatics 20, 1-13, 2019	40	2019
The genomic landscape of 2,023 colorectal cancers AJ Cornish, AJ Gruber, B Kinnersley, D Chubb, A Frangou, G Caravagna, ... Nature 633 (8028), 127-136, 2024	34	2024

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