| The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks M Ben Guebila, T Wang, CM Lopes-Ramos, V Fanfani, D Weighill, ... Genome Biology 24 (1), 45, 2023 | 25 | 2023 |
| Uncovering cancer gene regulation by accurate regulatory network inference from uninformative data D Seçilmiş, T Hillerton, D Morgan, A Tjärnberg, S Nelander, TEM Nordling, ... NPJ systems biology and applications 6 (1), 37, 2020 | 21 | 2020 |
| GeneSPIDER - Gene regulatory network inference benchmarking with controlled network and data properties A Tjärnberg, D Morgan, M Studham, TEM Nordling, E Sonnhammer Molecular Biosystems, 2017 | 18 | 2017 |
| Perturbation-based gene regulatory network inference to unravel oncogenic mechanisms D Morgan, M Studham, A Tjärnberg, H Weishaupt, FJ Swartling, ... Scientific reports 10 (1), 14149, 2020 | 14 | 2020 |
| A generalized framework for controlling FDR in gene regulatory network inference D Morgan, A Tjärnberg, TEM Nordling, ELL Sonnhammer Bioinformatics 35 (6), 1026-1032, 2019 | 14 | 2019 |
| Altered human gut virome in patients undergoing antibiotics therapy for Helicobacter pylori L Wang, H Yao, DC Morgan, KS Lau, SY Leung, JWK Ho, WK Leung Nature Communications 14 (1), 2196, 2023 | 12 | 2023 |
| gpuZoo: Cost-effective estimation of gene regulatory networks using the Graphics Processing Unit MB Guebila, DC Morgan, K Glass, ML Kuijjer, DL DeMeo, J Quackenbush NAR Genomics and Bioinformatics 4 (1), lqac002, 2022 | 6 | 2022 |
| Towards Reliable Gene Regulatory Network Inference D Morgan Department of Biochemistry and Biophysics, Stockholm University, 2019 | 1 | 2019 |
| Using methylation data to improve transcription factor binding prediction D Morgan, DL DeMeo, K Glass Epigenetics 19 (1), 2309826, 2024 | | 2024 |
| GeneSPIDER2: large scale GRN simulation and benchmarking with perturbed single-cell data M Garbulowski, T Hillerton, D Morgan, D Seçilmiş, L Sonnhammer, ... NAR Genomics and Bioinformatics 6 (3), lqae121, 2024 | | 2024 |
| MetaQuad: shared informative variants discovery in metagenomic samples S Xu, DC Morgan, G Qian, Y Huang, JWK Ho Bioinformatics Advances 4 (1), vbae030, 2024 | | 2024 |
| The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks G Ben, T Wang, CM Lopes-Ramos, V Fanfani, D Weighill, R Burkholz, ... BioMed Central Ltd, 2023 | | 2023 |
| Kui er M Guebila, DC Morgan, K Glass ML, DeMeo, DL, & Quackenbush, 2022 | | 2022 |
| Lung and Blood DNA Methylation in COPD and IPF Reveal Transcription Factor Perturbations D Morgan, J Morrow, BD Hobbs, AJ Ghosh, K Krone, S Li, EK Silverman, ... TP112. TP112 PROTEOMICS/GENOMICS/METABOLOMICS IN LUNG DISEASE, A4344-A4344, 2021 | | 2021 |
| Aging and Apoptosis Genes Lose Outgoing Regulatory Network Connections in COPD D Morgan, K Glass, J Morrow, CP Hersh, EK Silverman, J Quackenbush, ... B107. THE LUNG IS ONLY AS OLD AS IT FEELS, A4378-A4378, 2020 | | 2020 |
| A Gene Co-Expression Network Mining Approach for Differential Expression Analysis D Morgan The Ohio State University, 2015 | | 2015 |
Andreas TjärnbergAllen Institute, Brain ScienceVerifisert e-postadresse på nyu.edu