Sofie Salama

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David HausslerScientific Director, UC Santa Cruz Genomics Institute, University of California, Santa CruzVerifisert e-postadresse på soe.ucsc.edu
Sol KatzmanUC Santa Cruz Genomics InstituteVerifisert e-postadresse på soe.ucsc.edu
Joshua M StuartUC Santa Cruz Genomics InstituteVerifisert e-postadresse på ucsc.edu
Kyle EllrottOregon Health and Science UniversityVerifisert e-postadresse på ohsu.edu
Craig LoweAssistant Professor in Molecular Genetics and Microbiology, Duke University School of MedicineVerifisert e-postadresse på duke.edu
Adam SiepelSimons Center for Quantitative Biology, Cold Spring Harbor LaboratoryVerifisert e-postadresse på cshl.edu
Andrew KernEvergreen Professor of Biology, University of OregonVerifisert e-postadresse på uoregon.edu
Gordon MillsOregon Health & Science UniversityVerifisert e-postadresse på ohsu.edu
Chris SanderHarvard Medical School, Broad Institute, MGH, Dana-Farber Cancer Institute, Memorial Sloan KetteringVerifisert e-postadresse på sanderlab.org
Ilya ShmulevichProfessor, Institute for Systems BiologyVerifisert e-postadresse på systemsbiology.org
Katherine S PollardDirector, Gladstone Institute of Data Science & Biotechnology / UCSFVerifisert e-postadresse på gladstone.ucsf.edu
Jakob Skou PedersenProfessor at Department of Molecular Medicine, Aarhus UniversityVerifisert e-postadresse på ki.au.dk
Maximilian HaeusslerUC Santa Cruz Genomics Institute, UCSC Genome BrowserVerifisert e-postadresse på soe.ucsc.edu
John BlenisProfessor of Pharmacology, Weill Cornell MedicineVerifisert e-postadresse på med.cornell.edu
W James KentUC Santa Cruz Genomics Institute, University of California Santa Cruz, UCSC Genome BrowserVerifisert e-postadresse på soe.ucsc.edu
Ian Fiddes10x GenomicsVerifisert e-postadresse på 10xgenomics.com
David GreenbergTwist BioscienceVerifisert e-postadresse på twistbioscience.com
Benedict PatenProfessor; Associate Director, UC Santa Cruz Genomics Institute, University of CaliforniaVerifisert e-postadresse på ucsc.edu
Manuel Ares, Jr.University of California, Santa CruzVerifisert e-postadresse på ucsc.edu
pierre vanderhaeghenVIBVerifisert e-postadresse på kuleuven.vib.be

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Sofie Salama

Professor of MCD Bio; Faculty Dir. of Diversity UCSC Genomics Inst.

Verifisert e-postadresse på ucsc.edu

genomics stem cell biology developmental neurobiology molecular evolution molecular biology


Tittel Sorter etter sitater Sorter etter år Sorter etter tittel	Sitert av Sitert av	År
The cancer genome atlas pan-cancer analysis project JN Weinstein, EA Collisson, GB Mills, KRM Shaw, BA Ozenberger, ... Nature genetics 45 (10), 1113-1120, 2013	7363	2013
The somatic genomic landscape of glioblastoma CW Brennan, RGW Verhaak, A McKenna, B Campos, H Noushmehr, ... cell 155 (2), 462-477, 2013	5358	2013
Comprehensive, integrative genomic analysis of diffuse lower-grade gliomas Cancer Genome Atlas Research Network New England Journal of Medicine 372 (26), 2481-2498, 2015	3096	2015
Molecular profiling reveals biologically discrete subsets and pathways of progression in diffuse glioma M Ceccarelli, FP Barthel, TM Malta, TS Sabedot, SR Salama, BA Murray, ... Cell 164 (3), 550-563, 2016	2158	2016
Mammalian cell size is controlled by mTOR and its downstream targets S6K1 and 4EBP1/eIF4E DC Fingar, S Salama, C Tsou, ED Harlow, J Blenis Genes & development 16 (12), 1472-1487, 2002	1412	2002
An RNA gene expressed during cortical development evolved rapidly in humans KS Pollard, SR Salama, N Lambert, MA Lambot, S Coppens, JS Pedersen, ... Nature 443 (7108), 167-172, 2006	1185	2006
Comprehensive molecular characterization of pheochromocytoma and paraganglioma L Fishbein, I Leshchiner, V Walter, L Danilova, AG Robertson, ... Cancer cell 31 (2), 181-193, 2017	723	2017
Forces shaping the fastest evolving regions in the human genome KS Pollard, SR Salama, B King, AD Kern, T Dreszer, S Katzman, A Siepel, ... PLoS genetics 2 (10), e168, 2006	589	2006
A distal enhancer and an ultraconserved exon are derived from a novel retroposon G Bejerano, CB Lowe, N Ahituv, B King, A Siepel, SR Salama, EM Rubin, ... Nature 441 (7089), 87-90, 2006	582	2006
Quorum sensing controls biofilm formation in Vibrio cholerae through modulation of cyclic di-GMP levels and repression of vpsT. DE Waturangi, YA Bunardi, S Magdalena, S Beyhan, K Bilecen, ... Research Journal of Microbiology 6 (12), 388-402, 2007	540	2007
Establishing cerebral organoids as models of human-specific brain evolution AA Pollen, A Bhaduri, MG Andrews, TJ Nowakowski, OS Meyerson, ... Cell 176 (4), 743-756. e17, 2019	537	2019
Human-specific NOTCH2NL genes affect notch signaling and cortical neurogenesis IT Fiddes, GA Lodewijk, M Mooring, CM Bosworth, AD Ewing, ... Cell 173 (6), 1356-1369. e22, 2018	537	2018
An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons FMJ Jacobs, D Greenberg, N Nguyen, M Haeussler, AD Ewing, ... Nature 516 (7530), 242-245, 2014	526	2014
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes K Shafin, T Pesout, R Lorig-Roach, M Haukness, HE Olsen, C Bosworth, ... Nature biotechnology 38 (9), 1044-1053, 2020	481	2020
Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53 T Wang, J Zeng, CB Lowe, RG Sellers, SR Salama, M Yang, SM Burgess, ... Proceedings of the National Academy of Sciences 104 (47), 18613-18618, 2007	464	2007
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing JG Underwood, AV Uzilov, S Katzman, CS Onodera, JE Mainzer, ... Nature methods 7 (12), 995-1001, 2010	394	2010
Complete genomic and epigenetic maps of human centromeres N Altemose, GA Logsdon, AV Bzikadze, P Sidhwani, SA Langley, ... Science 376 (6588), eabl4178, 2022	384	2022
Integrating transcriptional and metabolite profiles to direct the engineering of lovastatin-producing fungal strains M Askenazi, EM Driggers, DA Holtzman, TC Norman, S Iverson, ... Nature biotechnology 21 (2), 150-156, 2003	301	2003
Human genome ultraconserved elements are ultraselected S Katzman, AD Kern, G Bejerano, G Fewell, L Fulton, RK Wilson, ... Science 317 (5840), 915-915, 2007	297	2007
Regulation of Rugosity and Biofilm Formation in Vibrio cholerae: Comparison of VpsT and VpsR Regulons and Epistasis Analysis of vpsT, vpsR, and hapR S Beyhan, K Bilecen, SR Salama, C Casper-Lindley, FH Yildiz Journal of bacteriology 189 (2), 388-402, 2007	217	2007

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