| Supercomputer-based ensemble docking drug discovery pipeline with application to COVID-19 A Acharya, R Agarwal, MB Baker, J Baudry, D Bhowmik, S Boehm, ... Journal of chemical information and modeling 60 (12), 5832-5852, 2020 | 182 | 2020 |
| Parametrization and benchmark of long-range corrected DFTB2 for organic molecules VQ Vuong, J Akkarapattiakal Kuriappan, M Kubillus, JJ Kranz, T Mast, ... Journal of chemical theory and computation 14 (1), 115-125, 2018 | 85 | 2018 |
| Impact of Cu(II) Binding on Structures and Dynamics of Aβ42 Monomer and Dimer: Molecular Dynamics Study PDQ Huy, QV Vuong, G La Penna, P Faller, MS Li ACS chemical neuroscience 7 (10), 1348-1363, 2016 | 75 | 2016 |
| Pre-Sodiated Ti3C2Tx MXene Structure and Behavior as Electrode for Sodium-Ion Capacitors A Brady, K Liang, VQ Vuong, R Sacci, K Prenger, M Thompson, ... ACS nano 15 (2), 2994-3003, 2021 | 69 | 2021 |
| Artificial neural network correction for density-functional tight-binding molecular dynamics simulations J Zhu, VQ Vuong, BG Sumpter, S Irle MRS Communications 9 (3), 867-873, 2019 | 61 | 2019 |
| A new method for navigating optimal direction for pulling ligand from binding pocket: application to ranking binding affinity by steered molecular dynamics QV Vuong, TT Nguyen, MS Li Journal of chemical information and modeling 55 (12), 2731-2738, 2015 | 57 | 2015 |
| Binding of glyco-acridine derivatives to lysozyme leads to inhibition of amyloid fibrillization QV Vuong, K Siposova, TT Nguyen, A Antosova, L Balogova, L Drajna, ... Biomacromolecules 14 (4), 1035-1043, 2013 | 51 | 2013 |
| The fragment molecular orbital method based on long-range corrected density-functional tight-binding VQ Vuong, Y Nishimoto, DG Fedorov, BG Sumpter, TA Niehaus, S Irle Journal of chemical theory and computation 15 (5), 3008-3020, 2019 | 42 | 2019 |
| Accurate Free Energies for Complex Condensed-Phase Reactions Using an Artificial Neural Network Corrected DFTB/MM Methodology CL Gómez-Flores, D Maag, M Kansari, VQ Vuong, S Irle, F Gräter, ... Journal of Chemical Theory and Computation 18 (2), 1213-1226, 2022 | 32 | 2022 |
| Structural and functional characterization of NEMO cleavage by SARS-CoV-2 3CLpro MA Hameedi, E T Prates, MR Garvin, II Mathews, BK Amos, O Demerdash, ... Nature communications 13 (1), 1-15, 2022 | 31 | 2022 |
| Density-functional tight-binding for phosphine-stabilized nanoscale gold clusters VQ Vuong, JML Madridejos, B Aradi, BG Sumpter, GF Metha, S Irle Chemical Science 11 (48), 13113-13128, 2020 | 24 | 2020 |
| Inactivation of the particulate methane monooxygenase (pMMO) in Methylococcus capsulatus (Bath) by acetylene MD Pham, YP Lin, Q Van Vuong, P Nagababu, BTA Chang, KY Ng, ... Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1854 (12), 1842-1852, 2015 | 22 | 2015 |
| Investigating the Accuracy of Water Models through the Van Hove Correlation Function RA Matsumoto, MW Thompson, VQ Vuong, W Zhang, Y Shinohara, ... Journal of Chemical Theory and Computation 17 (10), 5992-6005, 2021 | 17 | 2021 |
| Inhibition of insulin amyloid fibrillization by glyco-acridines: an in vitro and in silico study Q Van Vuong, Z Bednarikova, A Antosova, PDQ Huy, K Siposova, ... MedChemComm 6 (5), 810-822, 2015 | 17 | 2015 |
| Structure and Dynamics of the Reactive State for the Histidine Methylation Process and Catalytic Mechanism of SETD3: Insights from Quantum Mechanics/Molecular Mechanics … H Deng, Y Ma, WS Ren, VQ Vuong, P Qian, H Guo ACS Catalysis 10 (22), 13314-13322, 2020 | 14 | 2020 |
| How the Size and Density of Charge-Transfer Excitons Depend on Heterojunction’s Architecture MTN Varella, L Stojanovic, VQ Vuong, S Irle, TA Niehaus, M Barbatti The Journal of Physical Chemistry C 125 (10), 5458-5474, 2021 | 9 | 2021 |
| Accelerating the density-functional tight-binding method using graphical processing units VQ Vuong, C Cevallos, B Hourahine, B Aradi, J Jakowski, S Irle, ... The Journal of Chemical Physics 158 (8), 2023 | 8 | 2023 |
| Density-Functional Tight-Binding for Platinum Clusters and Bulk: Electronic vs Repulsive Parameters KH Lee, VQ Vuong, V Fung, D Jiang, S Irle MRS Advances 4 (33-34), 1821-1832, 2019 | 5 | 2019 |
| Multipole Expansion of Atomic Electron Density Fluctuation Interactions in the Density-Functional Tight-Binding Method VQ Vuong, B Aradi, AMN Niklasson, Q Cui, S Irle Journal of Chemical Theory and Computation 19 (21), 7592-7605, 2023 | 3 | 2023 |
| Reparameterization of the chemical-potential equalization model with DFTB3: A practical balance between accuracy and transferability VQ Vuong, Q Cui The Journal of Chemical Physics 158 (6), 2023 | 3 | 2023 |
Stephan IrleOak Ridge National LaboratoryVerifisert e-postadresse på ornl.gov