| BugSeq: a highly accurate cloud platform for long-read metagenomic analyses J Fan, S Huang, SD Chorlton BMC bioinformatics 22, 1-12, 2021 | 71 | 2021 |
| COVID-19 in an immunocompromised host: persistent shedding of viable SARS-CoV-2 and emergence of multiple mutations: a case report WF Leung, S Chorlton, J Tyson, GN Al-Rawahi, AN Jassem, N Prystajecky, ... International Journal of Infectious Diseases 114, 178-182, 2022 | 59 | 2022 |
| Toxoplasma gondii and schizophrenia: a review of published RCTs SD Chorlton Parasitology Research 116, 1793-1799, 2017 | 46 | 2017 |
| Agnostic sequencing for detection of viral pathogens NPG Gauthier, SD Chorlton, M Krajden, AR Manges Clinical microbiology reviews 36 (1), e00119-22, 2023 | 36 | 2023 |
| Nanopore metagenomic sequencing for detection and characterization of SARS-CoV-2 in clinical samples NPG Gauthier, C Nelson, MB Bonsall, K Locher, M Charles, C MacDonald, ... PLoS One 16 (11), e0259712, 2021 | 29 | 2021 |
| Reanalysis of Alzheimer’s brain sequencing data reveals absence of purported HHV6A and HHV7 SD Chorlton Journal of Bioinformatics and Computational Biology 18 (01), 2050012, 2020 | 22 | 2020 |
| Next-generation sequencing for cytomegalovirus antiviral resistance genotyping in a clinical virology laboratory SD Chorlton, G Ritchie, T Lawson, E McLachlan, MG Romney, N Matic, ... Antiviral Research 192, 105123, 2021 | 21 | 2021 |
| Starving the gut: a deficit of butyrate in the intestinal ecosystem of children with intestinal failure JK Dowhaniuk, J Szamosi, S Chorlton, J Owens, H Mileski, RF Clause, ... Journal of Parenteral and Enteral Nutrition 44 (6), 1112-1123, 2020 | 17 | 2020 |
| Alterations in the nasopharyngeal microbiome associated with SARS-CoV-2 infection status and disease severity NPG Gauthier, K Locher, C MacDonald, SD Chorlton, M Charles, ... PLoS One 17 (10), e0275815, 2022 | 16 | 2022 |
| Whole-genome sequencing of Corynebacterium diphtheriae isolates recovered from an inner-city population demonstrates the predominance of a single molecular strain SD Chorlton, G Ritchie, T Lawson, MG Romney, CF Lowe Journal of Clinical Microbiology 58 (2), 10.1128/jcm. 01651-19, 2020 | 16 | 2020 |
| Logical modeling and analysis of regulatory genetic networks in a non monotonic framework N Mobilia, A Rocca, S Chorlton, E Fanchon, L Trilling Bioinformatics and Biomedical Engineering: Third International Conference …, 2015 | 15 | 2015 |
| Phenotypic and genotypic correlates of penicillin susceptibility in nontoxigenic Corynebacterium diphtheriae, British Columbia, Canada, 2015–2018 J Zou, SD Chorlton, MG Romney, M Payne, T Lawson, A Wong, ... Emerging Infectious Diseases 26 (1), 97, 2020 | 14 | 2020 |
| BugSplit enables genome-resolved metagenomics through highly accurate taxonomic binning of metagenomic assemblies I Chandrakumar, NPG Gauthier, C Nelson, MB Bonsall, K Locher, ... Communications Biology 5 (1), 151, 2022 | 11 | 2022 |
| Ten common issues with reference sequence databases and how to mitigate them SD Chorlton Frontiers in Bioinformatics 4, 1278228, 2024 | 9 | 2024 |
| Phenotypic and genotypic correlates of penicillin susceptibility in nontoxigenic Corynebacterium diphtheriae J Zou, SD Chorlton, MG Romney, M Payne, T Lawson, A Wong, ... British Columbia, Canada 2018, 97-103, 2015 | 8 | 2015 |
| WGS of a cluster of MDR Shigella sonnei utilizing Oxford Nanopore R10.4.1 long-read sequencing G Ritchie, SD Chorlton, N Matic, J Bilawka, L Gowland, V Leung, ... Journal of Antimicrobial Chemotherapy 79 (1), 55-60, 2024 | 6 | 2024 |
| Performance of the BD Phoenix automated microbiology system for trimethoprim-sulfamethoxazole susceptibility testing of Staphylococcus aureus GN Al-Rawahi, S Chorlton, S Dhaliwal, GR Golding, P Tilley Journal of Clinical Microbiology 58 (1), 10.1128/jcm. 00994-19, 2019 | 6 | 2019 |
| BugSeq 16S: NanoCLUST with Improved Consensus Sequence Classification A Jung, SD Chorlton bioRxiv, 2021.03. 16.434153, 2021 | 4 | 2021 |
| No isolate, no problem: using a novel insertion sequence PCR to link rats to human shigellosis cases in an underserved urban community G Ritchie, V Leung, CG Himsworth, KA Byers, LKF Lee, SD Chorlton, ... Microbiology spectrum 11 (4), e04777-22, 2023 | 3 | 2023 |
| Adjunctive bradyzoite-directed therapy for reducing complications of congenital toxoplasmosis SD Chorlton Medical Hypotheses 133, 109376, 2019 | 3 | 2019 |
