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Amarda Shehu
Tytuł
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Deep learning improves antimicrobial peptide recognition
D Veltri, U Kamath, A Shehu
Bioinformatics 34 (16), 2740-2747, 2018
4472018
Principles and overview of sampling methods for modeling macromolecular structure and dynamics
T Maximova, R Moffatt, B Ma, R Nussinov, A Shehu
PLoS computational biology 12 (4), e1004619, 2016
2382016
Are nicotinic acetylcholine receptors coupled to G proteins?
N Kabbani, JC Nordman, BA Corgiat, DP Veltri, A Shehu, VA Seymour, ...
Bioessays 35 (12), 1025-1034, 2013
1112013
Basin hopping as a general and versatile optimization framework for the characterization of biological macromolecules
B Olson, I Hashmi, K Molloy, A Shehu
Advances in Artificial Intelligence 2012 (1), 674832, 2012
1042012
Modeling protein conformational ensembles: From missing loops to equilibrium fluctuations
A Shehu, C Clementi, LE Kavraki
Proteins: Structure, Function, and Bioinformatics 65 (1), 164-179, 2006
982006
Menthol binding and inhibition of α7-nicotinic acetylcholine receptors
A Ashoor, JC Nordman, D Veltri, KHS Yang, L Al Kury, Y Shuba, ...
PloS one 8 (7), e67674, 2013
822013
Multiscale characterization of protein conformational ensembles
A Shehu, LE Kavraki, C Clementi
Proteins: Structure, Function, and Bioinformatics 76 (4), 837-851, 2009
822009
A survey of computational methods for protein function prediction
A Shehu, D Barbará, K Molloy
Big data analytics in genomics, 225-298, 2016
812016
Guiding the search for native-like protein conformations with an ab-initio tree-based exploration
A Shehu, B Olson
The International Journal of Robotics Research 29 (8), 1106-1127, 2010
752010
Mapping the conformation space of wildtype and mutant H-Ras with a memetic, cellular, and multiscale evolutionary algorithm
R Clausen, B Ma, R Nussinov, A Shehu
PLoS computational biology 11 (9), e1004470, 2015
722015
Improving recognition of antimicrobial peptides and target selectivity through machine learning and genetic programming
D Veltri, U Kamath, A Shehu
IEEE/ACM transactions on computational biology and bioinformatics 14 (2 …, 2015
712015
Effective automated feature construction and selection for classification of biological sequences
U Kamath, K De Jong, A Shehu
PloS one 9 (7), e99982, 2014
662014
Menthol inhibits 5-HT3 receptor–mediated currents
A Ashoor, JC Nordman, D Veltri, KHS Yang, Y Shuba, L Al Kury, B Sadek, ...
Journal of Pharmacology and Experimental Therapeutics 347 (2), 398-409, 2013
652013
Modeling structures and motions of loops in protein molecules
A Shehu, LE Kavraki
Entropy 14 (2), 252-290, 2012
602012
Multi-objective stochastic search for sampling local minima in the protein energy surface
B Olson, A Shehu
Proceedings of the International Conference on Bioinformatics, Computational …, 2013
592013
Interpretable deep graph generation with node-edge co-disentanglement
X Guo, L Zhao, Z Qin, L Wu, A Shehu, Y Ye
Proceedings of the 26th ACM SIGKDD international conference on knowledge …, 2020
552020
Investigation of a dilated cardiomyopathy–associated variant in BAG3 using genome-edited iPSC-derived cardiomyocytes
C McDermott-Roe, W Lv, T Maximova, S Wada, J Bukowy, M Marquez, ...
JCI insight 4 (22), 2019
512019
Restriction versus guidance in protein structure prediction
JA Hegler, J Lätzer, A Shehu, C Clementi, PG Wolynes
Proceedings of the National Academy of Sciences 106 (36), 15302-15307, 2009
512009
Off-lattice protein structure prediction with homologous crossover
B Olson, K De Jong, A Shehu
Proceedings of the 15th annual conference on Genetic and evolutionary …, 2013
492013
Probabilistic search and optimization for protein energy landscapes
A Shehu, S Aluru, A Singh
Handbook of Computational Molecular Biology, 2013
482013
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