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Nathan D Olson
Tytuł
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The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Science 376 (6588), 44-53, 2022
25772022
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
Nature biotechnology 37 (10), 1155-1162, 2019
15552019
A draft human pangenome reference
WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ...
Nature 617 (7960), 312-324, 2023
6182023
A robust benchmark for detection of germline large deletions and insertions
JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ...
Nature biotechnology 38 (11), 1347-1355, 2020
385*2020
An open resource for accurately benchmarking small variant and reference calls
JM Zook, J McDaniel, ND Olson, J Wagner, H Parikh, H Heaton, SA Irvine, ...
Nature biotechnology 37 (5), 561-566, 2019
3312019
A complete reference genome improves analysis of human genetic variation
Science 376 (6588), 2022
310*2022
Nitrogen fixation and nitrogen transformations in marine symbioses
CL Fiore, JK Jarett, ND Olson, MP Lesser
Trends in microbiology 18 (10), 455-463, 2010
2842010
The complete sequence of a human Y chromosome
A Rhie, S Nurk, M Cechova, SJ Hoyt, DJ Taylor, N Altemose, PW Hook, ...
Nature 621 (7978), 344-354, 2023
2652023
Performing skin microbiome research: a method to the madness
HH Kong, B Andersson, T Clavel, JE Common, SA Jackson, ND Olson, ...
Journal of Investigative Dermatology 137 (3), 561-568, 2017
2522017
Best practices for evaluating single nucleotide variant calling methods for microbial genomics
ND Olson, SP Lund, RE Colman, JT Foster, JW Sahl, JM Schupp, P Keim, ...
Frontiers in genetics 6, 235, 2015
2322015
Diazotrophic bacteria associated with Hawaiian Montipora corals: diversity and abundance in correlation with symbiotic dinoflagellates
ND Olson, TD Ainsworth, RD Gates, M Takabayashi
Journal of Experimental Marine Biology and Ecology 371 (2), 140-146, 2009
1832009
DNA extract characterization process for microbial detection methods development and validation
ND Olson, JB Morrow
BMC research notes 5, 1-14, 2012
1792012
Curated variation benchmarks for challenging medically relevant autosomal genes
J Wagner, ND Olson, L Harris, J McDaniel, H Cheng, A Fungtammasan, ...
Nature biotechnology 40 (5), 672-680, 2022
1682022
Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes
ND Olson, TJ Treangen, CM Hill, V Cepeda-Espinoza, J Ghurye, S Koren, ...
Briefings in bioinformatics 20 (4), 1140-1150, 2019
1612019
Semi-automated assembly of high-quality diploid human reference genomes
ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ...
Nature 611 (7936), 519-531, 2022
1532022
PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions
ND Olson, J Wagner, J McDaniel, SH Stephens, ST Westreich, ...
Cell genomics 2 (5), 2022
1522022
Benchmarking challenging small variants with linked and long reads
J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ...
Cell genomics 2 (5), 2022
1522022
Antibiotic concentrations decrease during wastewater treatment but persist at low levels in reclaimed water
P Kulkarni, ND Olson, GA Raspanti, RE Rosenberg Goldstein, SG Gibbs, ...
International journal of environmental research and public health 14 (6), 668, 2017
1332017
Variant calling and benchmarking in an era of complete human genome sequences
ND Olson, J Wagner, N Dwarshuis, KH Miga, FJ Sedlazeck, M Salit, ...
Nature Reviews Genetics 24 (7), 464-483, 2023
652023
Conventional wastewater treatment and reuse site practices modify bacterial community structure but do not eliminate some opportunistic pathogens in reclaimed water
P Kulkarni, ND Olson, JN Paulson, M Pop, C Maddox, E Claye, ...
Science of the Total Environment 639, 1126-1137, 2018
652018
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