| Triple SILAC quantitative proteomic analysis reveals differential abundance of cell signaling proteins between normal and lung cancer-derived exosomes DJ Clark, WE Fondrie, A Yang, L Mao Journal of proteomics 133, 161-169, 2016 | 150 | 2016 |
| Identification of the ESKAPE pathogens by mass spectrometric analysis of microbial membrane glycolipids LM Leung, WE Fondrie, Y Doi, JK Johnson, DK Strickland, RK Ernst, ... Scientific reports 7 (1), 6403, 2017 | 99 | 2017 |
| Redefining the breast cancer exosome proteome by tandem mass tag quantitative proteomics and multivariate cluster analysis DJ Clark, WE Fondrie, Z Liao, PI Hanson, A Fulton, L Mao, AJ Yang Analytical chemistry 87 (20), 10462-10469, 2015 | 84 | 2015 |
| De novo mass spectrometry peptide sequencing with a transformer model M Yilmaz, W Fondrie, W Bittremieux, S Oh, WS Noble International Conference on Machine Learning, 25514-25522, 2022 | 62 | 2022 |
| Interfacial Energy Conversion in RuII Polypyridyl-Derivatized Oligoproline Assemblies on TiO2 D Ma, SE Bettis, K Hanson, M Minakova, L Alibabaei, W Fondrie, ... Journal of the American Chemical Society 135 (14), 5250-5253, 2013 | 54 | 2013 |
| Rapid microbial identification and antibiotic resistance detection by mass spectrometric analysis of membrane lipids T Liang, LM Leung, B Opene, WE Fondrie, YI Lee, CE Chandler, SH Yoon, ... Analytical chemistry 91 (2), 1286-1294, 2018 | 51 | 2018 |
| LRP1 (Low-Density Lipoprotein Receptor–Related Protein 1) Regulates Smooth Muscle Contractility by Modulating Ca2+ Signaling and Expression of … DT Au, Z Ying, EO Hernández-Ochoa, WE Fondrie, B Hampton, ... Arteriosclerosis, Thrombosis, and Vascular Biology 38 (11), 2651-2664, 2018 | 51 | 2018 |
| mokapot: Fast and flexible semisupervised learning for peptide detection WE Fondrie, WS Noble Journal of Proteome Research 20 (4), 1966-1971, 2021 | 49 | 2021 |
| Sequence-to-sequence translation from mass spectra to peptides with a transformer model M Yilmaz, WE Fondrie, W Bittremieux, CF Melendez, R Nelson, V Ananth, ... Nature communications 15 (1), 6427, 2024 | 35 | 2024 |
| Evaluating proteomics imputation methods with improved criteria L Harris, WE Fondrie, S Oh, WS Noble Journal of proteome research 22 (11), 3427-3438, 2023 | 25 | 2023 |
| Machine learning strategy that leverages large data sets to boost statistical power in small-scale experiments WE Fondrie, WS Noble Journal of proteome research 19 (3), 1267-1274, 2020 | 24 | 2020 |
| Pathogen identification direct from polymicrobial specimens using membrane glycolipids WE Fondrie, T Liang, BL Oyler, LM Leung, RK Ernst, DK Strickland, ... Scientific reports 8 (1), 15857, 2018 | 23 | 2018 |
| Subzero, saline incubations of Colwellia psychrerythraea reveal strategies and biomarkers for sustained life in extreme icy environments MC Mudge, BL Nunn, E Firth, M Ewert, K Hales, WE Fondrie, WS Noble, ... Environmental microbiology 23 (7), 3840-3866, 2021 | 17 | 2021 |
| Optimized surface acoustic wave nebulization facilitates bacterial phenotyping T Liang, T Schneider, SH Yoon, BL Oyler, LM Leung, WE Fondrie, G Yen, ... International Journal of Mass Spectrometry 427, 65-72, 2018 | 17 | 2018 |
| Semisupervised machine learning for sensitive open modification spectral library searching I Arab, WE Fondrie, K Laukens, W Bittremieux Journal of proteome research 22 (2), 585-593, 2023 | 12 | 2023 |
| The Crux toolkit for analysis of bottom-up tandem mass spectrometry proteomics data A Kertesz-Farkas, FL Nii Adoquaye Acquaye, K Bhimani, JK Eng, ... Journal of proteome research 22 (2), 561-569, 2023 | 12 | 2023 |
| Assessment of the therapeutic potential of persimmon leaf extract on prediabetic subjects MM Khan, BQ Tran, YJ Jang, SH Park, WE Fondrie, K Chowdhury, ... Molecules and cells 40 (7), 466-475, 2017 | 12 | 2017 |
| Building spectral libraries from narrow-window data-independent acquisition mass spectrometry data LR Heil, WE Fondrie, CD McGann, AJ Federation, WS Noble, ... Journal of proteome research 21 (6), 1382-1391, 2022 | 11 | 2022 |
| Role of the LDL receptor-related protein 1 in regulating protease activity and signaling pathways in the vasculature DT Au, AL Arai, WE Fondrie, SC Muratoglu, DK Strickland Current drug targets 19 (11), 1276-1288, 2018 | 10 | 2018 |
| ppx: Programmatic access to proteomics data repositories WE Fondrie, W Bittremieux, WS Noble Journal of Proteome Research 20 (9), 4621-4624, 2021 | 8 | 2021 |
David J ClarkAstraZenecaZweryfikowany adres z astrazeneca.com