| CHARMM-GUI Membrane Builder for Complex Biological Membrane Simulations with Glycolipids and Lipoglycans J Lee, DS Patel, J Ståhle, SJ Park, NR Kern, S Kim, J Lee, X Cheng, ... Journal of chemical theory and computation 15 (1), 775-786, 2018 | 531 | 2018 |
| CHARMM‐GUI ligand reader and modeler for CHARMM force field generation of small molecules S Kim, J Lee, S Jo, CL Brooks III, HS Lee, W Im Journal of computational chemistry 38 (21), 1879-1886, 2017 | 474 | 2017 |
| CHARMM‐GUI 10 years for biomolecular modeling and simulation S Jo, X Cheng, J Lee, S Kim, SJ Park, DS Patel, AH Beaven, KI Lee, H Rui, ... Journal of computational chemistry 38 (15), 1114-1124, 2017 | 314 | 2017 |
| Bilayer properties of lipid A from various Gram-negative bacteria S Kim, DS Patel, S Park, J Slusky, JB Klauda, G Widmalm, W Im Biophysical journal 111 (8), 1750-1760, 2016 | 130 | 2016 |
| CHARMM-GUI polymer builder for modeling and simulation of synthetic polymers YK Choi, SJ Park, S Park, S Kim, NR Kern, J Lee, W Im Journal of chemical theory and computation 17 (4), 2431-2443, 2021 | 109 | 2021 |
| CHARMM-GUI supports hydrogen mass repartitioning and different protonation states of phosphates in lipopolysaccharides Y Gao, J Lee, IPS Smith, H Lee, S Kim, Y Qi, JB Klauda, G Widmalm, ... Journal of chemical information and modeling 61 (2), 831-839, 2021 | 99 | 2021 |
| CHARMM-GUI free energy calculator for absolute and relative ligand solvation and binding free energy simulations S Kim, H Oshima, H Zhang, NR Kern, S Re, J Lee, B Roux, Y Sugita, ... Journal of chemical theory and computation 16 (11), 7207-7218, 2020 | 86 | 2020 |
| CHARMM-GUI membrane builder for lipid nanoparticles with ionizable cationic lipids and PEGylated lipids S Park, YK Choi, S Kim, J Lee, W Im Journal of chemical information and modeling 61 (10), 5192-5202, 2021 | 69 | 2021 |
| Synthetic immunotherapeutics against Gram-negative pathogens MS Feigman, S Kim, SE Pidgeon, Y Yu, GM Ongwae, DS Patel, S Regen, ... Cell chemical biology 25 (10), 1185-1194. e5, 2018 | 40 | 2018 |
| CHARMM-GUI free energy calculator for practical ligand binding free energy simulations with AMBER H Zhang, S Kim, TJ Giese, TS Lee, J Lee, DM York, W Im Journal of chemical information and modeling 61 (9), 4145-4151, 2021 | 37 | 2021 |
| Neurofilament stoichiometry simulations during neurodegeneration suggest a remarkable self-sufficient and stable in vivo protein structure S Kim, R Chang, C Teunissen, Y Gebremichael, A Petzold Journal of the neurological sciences 307 (1-2), 132-138, 2011 | 28 | 2011 |
| Effects of molecular model, ionic strength, divalent ions, and hydrophobic interaction on human neurofilament conformation J Lee, S Kim, R Chang, L Jayanthi, Y Gebremichael The Journal of Chemical Physics 138 (1), 2013 | 24 | 2013 |
| Foldable detergents for membrane protein study: Importance of detergent core flexibility in protein stabilization L Ghani, S Kim, H Wang, HS Lee, JS Mortensen, S Katsube, Y Du, ... Chemistry–A European Journal 28 (21), e202200116, 2022 | 15 | 2022 |
| Conformationally flexible core-bearing detergents with a hydrophobic or hydrophilic pendant: Effect of pendant polarity on detergent conformation and membrane protein stability A Sadaf, S Kim, HE Bae, H Wang, A Nygaard, Y Uegaki, Y Du, CF Munk, ... Acta biomaterialia 128, 393-407, 2021 | 15 | 2021 |
| Broadening activity of polymyxin by quaternary ammonium grafting GM Ongwae, KR Morrison, RA Allen, S Kim, W Im, WM Wuest, MM Pires ACS infectious diseases 6 (6), 1427-1435, 2020 | 15 | 2020 |
| Long-ranged protein-glycan interactions stabilize von Willebrand factor A2 domain from mechanical unfolding C Dong, J Lee, S Kim, W Lai, EB Webb III, A Oztekin, XF Zhang, W Im Scientific reports 8 (1), 16017, 2018 | 15 | 2018 |
| Insight into elongation stages of peptidoglycan processing in bacterial cytoplasmic membranes S Kim, MM Pires, W Im Scientific Reports 8 (1), 17704, 2018 | 14 | 2018 |
| Systematic Assessment of Accessibility to the Surface of Staphylococcus aureus NJ Ferraro, S Kim, W Im, MM Pires ACS chemical biology 16 (11), 2527-2536, 2021 | 13 | 2021 |
| Practical Guidance for Consensus Scoring and Force Field Selection in Protein–Ligand Binding Free Energy Simulations H Zhang, S Kim, W Im Journal of chemical information and modeling 62 (23), 6084-6093, 2022 | 12 | 2022 |
| Conformational rearrangements in the sensory RcsF/OMP complex mediate signal transduction across the bacterial cell envelope SR Lach, S Kumar, S Kim, W Im, A Konovalova PLoS Genetics 19 (1), e1010601, 2023 | 11 | 2023 |