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Mario dos Reis
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Solving the riddle of codon usage preferences: a test for translational selection
M dos Reis, R Savva, L Wernisch
Nucleic acids research 32 (17), 5036-5044, 2004
8162004
Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny
M dos Reis, J Inoue, M Hasegawa, RJ Asher, PCJ Donoghue, Z Yang
Proceedings of the Royal Society of London B: Biological Sciences 279 (1742 …, 2012
5652012
Uncertainty in the timing of origin of animals and the limits of precision in molecular timescales
M dos Reis, Y Thawornwattana, K Angelis, MJ Telford, PCJ Donoghue, ...
Current Biology 25 (22), R1079-R1081, 2015
4712015
Phylogenomics reveals the evolutionary timing and pattern of butterflies and moths
AY Kawahara, D Plotkin, M Espeland, K Meusemann, EFA Toussaint, ...
Proceedings of the National Academy of Sciences 116 (45), 22657-22663, 2019
4232019
Statistical properties of the branch-site test of positive selection
Z Yang, M dos Reis
Molecular biology and evolution 28 (3), 1217-1228, 2011
3532011
Approximate Likelihood Calculation on a Phylogeny for Bayesian Estimation of Divergence Times
M dos Reis, Z Yang
Molecular Biology and Evolution 28 (7), 2161-2172, 2011
3292011
Bayesian molecular clock dating of species divergences in the genomics era
M dos Reis, PCJ Donoghue, Z Yang
Nature Reviews Genetics 17 (2), 71-80, 2016
3072016
Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K‐12 genome
M dos Reis, L Wernisch, R Savva
Nucleic acids research 31 (23), 6976-6985, 2003
2812003
The interrelationships of placental mammals and the limits of phylogenetic inference
JE Tarver, M dos Reis, S Mirarab, RJ Moran, S Parker, JE O’Reilly, ...
Genome biology and evolution 8 (2), 330-344, 2016
2342016
Phylogenomic resolution of the cetacean tree of life using target sequence capture
MR McGowen, G Tsagkogeorga, S Álvarez-Carretero, M dos Reis, ...
Systematic Biology 69 (3), 479-501, 2020
2302020
A biologist’s guide to Bayesian phylogenetic analysis
FF Nascimento, M dos Reis, Z Yang
Nature ecology & evolution 1 (10), 1446-1454, 2017
2262017
Churchill, a zinc finger transcriptional activator, regulates the transition between gastrulation and neurulation
G Sheng, M dos Reis, CD Stern
Cell 115 (5), 603-613, 2003
2212003
Constraining uncertainty in the timescale of angiosperm evolution and the veracity of a Cretaceous Terrestrial Revolution
J Barba‐Montoya, M dos Reis, H Schneider, PCJ Donoghue, Z Yang
New Phytologist, 2018
1812018
Using phylogenomic data to explore the effects of relaxed clocks and calibration strategies on divergence time estimation: Primates as a test case
M dos Reis, GF Gunnell, J Barba-Montoya, A Wilkins, Z Yang, A Yoder
Systematic Biology 67 (4), 594-615, 2018
1722018
A Beginner's Guide to Estimating the Non-synonymous to Synonymous Rate Ratio of all Protein-Coding Genes in a Genome
DC Jeffares, B Tomiczek, V Sojo, M dos Reis
Parasite Genomics Protocols, 65-90, 2015
1722015
A species-level timeline of mammal evolution integrating phylogenomic data
S Álvarez-Carretero, AU Tamuri, M Battini, FF Nascimento, E Carlisle, ...
Nature 602 (7896), 263-267, 2022
1582022
Dating Tips for Divergence-Time Estimation
JE O’Reilly, M dos Reis, PCJ Donoghue
Trends in Genetics 31 (11), 637-650, 2015
1542015
Identifying changes in selective constraints: host shifts in influenza
AU Tamuri, M dos Reis, AJ Hay, RA Goldstein
PLoS Comput Biol 5 (11), e1000564, 2009
1392009
The unbearable uncertainty of Bayesian divergence time estimation
M dos Reis, Z Yang
Journal of Systematics and Evolution 51 (1), 30-43, 2013
1362013
Estimating the distribution of selection coefficients from phylogenetic data using sitewise mutation-selection models
AU Tamuri, M dos Reis, RA Goldstein
Genetics 190 (3), 1101-1115, 2012
1262012
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